MirGeneDB

MirGeneDB ID

Xtr-Mir-124-P2-v2

Family name MIR-124 (all species)
Seed UAAGGCA
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-124
Paralogues Xtr-Mir-124-P1-v1  Xtr-Mir-124-P1-v2  Xtr-Mir-124-P2-v1  Xtr-Mir-124-P3-v1  Xtr-Mir-124-P3-v2 
Orthologues Aae-Mir-124  Aca-Mir-124-P2-v1  Aca-Mir-124-P2-v2  Ami-Mir-124-P2-v1  Ami-Mir-124-P2-v2  Asu-Mir-124  Bfl-Mir-124  Bge-Mir-124  Bta-Mir-124-P2-v1  Bta-Mir-124-P2-v2  Cel-Mir-124  Cfa-Mir-124-P2-v1  Cfa-Mir-124-P2-v2  Cli-Mir-124-P2-v1  Cli-Mir-124-P2-v2  Cpi-Mir-124-P2-v1  Cpi-Mir-124-P2-v2  Cpo-Mir-124-P2-v1  Cpo-Mir-124-P2-v2  Cte-Mir-124  Dan-Mir-124  Dme-Mir-124  Dmo-Mir-124  Dno-Mir-124-P2-v1  Dno-Mir-124-P2-v2  Dpu-Mir-124  Dre-Mir-124-P2a-v1  Dre-Mir-124-P2a-v2  Dre-Mir-124-P2b-v1  Dre-Mir-124-P2b-v2  Ete-Mir-124-P2-v1  Ete-Mir-124-P2-v2  Gga-Mir-124-P2-v1  Gga-Mir-124-P2-v2  Hme-Mir-124  Hsa-Mir-124-P2-v1  Hsa-Mir-124-P2-v2  Isc-Mir-124  Lan-Mir-124  Mdo-Mir-124-P2-v1  Mdo-Mir-124-P2-v2  Mml-Mir-124-P2-v1  Mml-Mir-124-P2-v2  Mmu-Mir-124-P2-v1  Mmu-Mir-124-P2-v2  Oan-Mir-124-P2-v1  Oan-Mir-124-P2-v2  Ocu-Mir-124-P2-v1  Ocu-Mir-124-P2-v2  Pfl-Mir-124  Pmi-Mir-124  Rno-Mir-124-P2-v1  Rno-Mir-124-P2-v2  Sha-Mir-124-P2-v1  Sha-Mir-124-P2-v2  Sko-Mir-124  Spu-Mir-124  Sto-Mir-124-P2-v1  Sto-Mir-124-P2-v2  Tca-Mir-124  Tgu-Mir-124-P2-v1  Tgu-Mir-124-P2-v2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Bilateria
Genome context
(xenTro7)
KB021656: 31643053-31643110 [-] UCSC
Clustered MiRNAs
(< 10kb from Mir-124-P2-v2)
Mir-124-P2-v1 KB021656: 31643052-31643110 [-] UCSC
Mir-124-P2-v2 KB021656: 31643053-31643110 [-] UCSC
Precursor
(pre-Mir +30nt flank)
AUUUUGGUCCGAUCUAAGUCUCUGACUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGUGGAGCCUACAUGCAGCCCGAAGCCU
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Structure
        10          20        30        40        50         
AUUUUGGUCCGAUCUAA--|U    G     CC        A   GA        UAAUG 
                   G CUCU ACUCU  GUGUUCAC GCG  CCUUGAUU     \
                   C GAGG UGAGA  CGUAAGUG CGC  GGAAUUAA     U
UCCGAAGCCCGACGUACAU^C    -     AC        G   AC        CAUAC 
      110       100         90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Em Em Em Em He
Star sequence

Xtr-Mir-124-P2-v2_5p*

MirBase accessionNone
Sequence
0- CGUGUUCACAGCGGACCUUGAUU -23
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Mature sequence

Xtr-Mir-124-P2-v2_3p

MirBase accessionMIMAT0003683
Sequence
36- UUAAGGCACGCGGUGAAUGCCA -58
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Validated targets TargetScanVert: xtr-miR-124