MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-208-P1

Family name MIR-208 (all species)
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-208b
Paralogues Rno-Mir-208-P1-v1  Rno-Mir-208-P2 
Orthologues Bta-Mir-208-P1-v1  Cfa-Mir-208-P1-v1  Cja-Mir-208-P1  Cpo-Mir-208-P1-v1  Dno-Mir-208-P1-v1  Dre-Mir-208-P1  Ebu-Mir-208-o1  Eca-Mir-208-P1-v1  Ete-Mir-208-P1a  Ete-Mir-208-P1b  Gmo-Mir-208-P1  Hsa-Mir-208-P1-v1  Laf-Mir-208-P1  Lch-Mir-208-P1  Loc-Mir-208-P1c  Loc-Mir-208-P1d  Loc-Mir-208-P1e  Mal-Mir-208-P1  Mdo-Mir-208-P1  Mml-Mir-208-P1-v1  Mmr-Mir-208-P1-v1  Mmu-Mir-208-P1-v1  Mun-Mir-208-P1  Neu-Mir-208-P1  Ocu-Mir-208-P1-v1  Pab-Mir-208-P1  Sha-Mir-208-P1  Sto-Mir-208-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(rn6)		 chr15: 33639539-33639595 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-208-P1-v2)		 Mir-208-P2 chr15: 33613463-33613519 [-] UCSC Ensembl
Mir-208-P1-v1 chr15: 33639539-33639595 [-] UCSC Ensembl
Mir-208-P1-v2 chr15: 33639539-33639595 [-] UCSC Ensembl
Variant

Rno-Mir-208-P1-v2
Seed AUAAGAC
Precursor
(pre-Mir +30nt flank)		 
AGGCACCCCCACCUCCUGCUCCUCUCAGGGAAGCUUUUUGCUCGCGUUAUGUUUCUCAUCCGAAUAUAAGACGAACAAAAGGUUUGUCUGAGGGCUGAGUGCACCCACCUGGGGUAC
Get precursor sequence
Structure
        10        20          30        40        50        
AGGCACCCCCACCUCCUG   --|       G          C   CG       UCUC 
                  CUC  CUCUCAGG AAGCUUUUUG UCG  UUAUGUU    \
                  GAG  GGGAGUCU UUUGGAAAAC AGC  AAUAUAA    A
CAUGGGGUCCACCCACGU   UC^       G          A   AG       GCCU 
     110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Star sequence

Rno-Mir-208-P1-v2_5p*
mirBase accessionMIMAT0017844
Sequence 
0- AAGCUUUUUGCUCGCGUUAUGUU -23
Get sequence
Proposed targets TargetScanVert: rno-miR-208b-5p
miRDB: MIMAT0017844
Mature sequence

Rno-Mir-208-P1-v2_3p
mirBase accessionMIMAT0017845
Sequence 
34- UAUAAGACGAACAAAAGGUUUGU -57
Get sequence
Proposed targets TargetScanVert: rno-miR-208b-3p
miRDB: MIMAT0017845
Variant

Rno-Mir-208-P1-v1
Seed UAAGACG
Precursor
(pre-Mir +30nt flank)		 
AGGCACCCCCACCUCCUGCUCCUCUCAGGGAAGCUUUUUGCUCGCGUUAUGUUUCUCAUCCGAAUAUAAGACGAACAAAAGGUUUGUCUGAGGGCUGAGUGCACCCACCUGGGGUAC
Get precursor sequence
Structure
        10        20          30        40        50        
AGGCACCCCCACCUCCUG   --|       G          C   CG      UUCUC 
                  CUC  CUCUCAGG AAGCUUUUUG UCG  UUAUGU     \
                  GAG  GGGAGUCU UUUGGAAAAC AGC  AAUAUA     A
CAUGGGGUCCACCCACGU   UC^       G          A   AG      AGCCU 
     110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Star sequence

Rno-Mir-208-P1-v1_5p*
mirBase accessionMIMAT0017844
Sequence 
0- AAGCUUUUUGCUCGCGUUAUGU -22
Get sequence
Proposed targets TargetScanVert: rno-miR-208b-5p
miRDB: MIMAT0017844
Mature sequence

Rno-Mir-208-P1-v1_3p
mirBase accessionMIMAT0017845
Sequence 
35- AUAAGACGAACAAAAGGUUUGU -57
Get sequence
Proposed targets TargetScanVert: rno-miR-208b-3p
miRDB: MIMAT0017845