Mir-208-P1

MirGeneDB ID

Cja-Mir-208-P1

Family name

MIR-208 (all species)

Species

White-tufted-ear marmoset (Callithrix jacchus)

MiRBase ID

Paralogues

Cja-Mir-208-P2

Orthologues

Bta-Mir-208-P1-v1 Cfa-Mir-208-P1-v1 Cpo-Mir-208-P1-v1 Dno-Mir-208-P1-v1 Dre-Mir-208-P1 Ebu-Mir-208-o1 Eca-Mir-208-P1-v1 Ete-Mir-208-P1a Ete-Mir-208-P1b Gmo-Mir-208-P1 Hsa-Mir-208-P1-v1 Laf-Mir-208-P1 Lch-Mir-208-P1 Loc-Mir-208-P1c Loc-Mir-208-P1d Loc-Mir-208-P1e Mal-Mir-208-P1 Mdo-Mir-208-P1 Mml-Mir-208-P1-v1 Mmr-Mir-208-P1-v1 Mmu-Mir-208-P1-v1 Mun-Mir-208-P1 Neu-Mir-208-P1 Ocu-Mir-208-P1-v1 Pab-Mir-208-P1 Rno-Mir-208-P1-v1 Sha-Mir-208-P1 Sto-Mir-208-P1

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)

CM021924.1: 53578788-53578844 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-208-P1)

Mir-208-P2 CM021924.1: 53549688-53549744 [-] UCSC Ensembl
Mir-208-P1 CM021924.1: 53578788-53578844 [-] UCSC Ensembl

Seed

UAAGACG

Precursor
(pre-Mir +30nt flank)

CCCUGGCCCCAGUAUUAUCUCCUCUCAGGGAAGCUUUUUGCUCGAAUUAUGUUUCUGAUCCGAAUAUAAGACGAACAAAAGGUUUGUCUGAGGGCAGAGUGCUUCCGUCUGGGGCAA

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Structure

        10          20        30        40        50        
CCCUGGCCCCAGUAUUA--|  C        G          C   AA      UUCUG 
                   UCU CUCUCAGG AAGCUUUUUG UCG  UUAUGU     \
                   AGA GGGAGUCU UUUGGAAAAC AGC  AAUAUA     A
AACGGGGUCUGCCUUCGUG^  C        G          A   AG      AGCCU 
     110       100        90        80        70        60

Deep sequencing

3' NTU

Unknown

Motifs

Tissue expression

To

Star sequence

Cja-Mir-208-P1_5p* (predicted)

mirBase accession

None

Sequence

0- AAGCUUUUUGCUCGAAUUAUGU -22

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Mature sequence

Cja-Mir-208-P1_3p (predicted)

mirBase accession

None

Sequence

35- AUAAGACGAACAAAAGGUUUGU -57

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