MirGeneDB 3.0
MirGeneDB ID

Hsa-Mir-208-P1

Family name MIR-208 (all species)
Species Human (Homo sapiens)
MiRBase ID hsa-mir-208b
Paralogues Hsa-Mir-208-P2 
Orthologues Bta-Mir-208-P1-v1  Cfa-Mir-208-P1-v1  Cja-Mir-208-P1  Cpo-Mir-208-P1-v1  Dno-Mir-208-P1-v1  Dre-Mir-208-P1  Ebu-Mir-208-o1  Eca-Mir-208-P1-v1  Ete-Mir-208-P1a  Ete-Mir-208-P1b  Gmo-Mir-208-P1  Laf-Mir-208-P1  Lch-Mir-208-P1  Loc-Mir-208-P1c  Loc-Mir-208-P1d  Loc-Mir-208-P1e  Mal-Mir-208-P1  Mdo-Mir-208-P1  Mml-Mir-208-P1-v1  Mmr-Mir-208-P1-v1  Mmu-Mir-208-P1-v1  Mun-Mir-208-P1  Neu-Mir-208-P1  Ocu-Mir-208-P1-v1  Pab-Mir-208-P1  Rno-Mir-208-P1-v1  Sha-Mir-208-P1  Sto-Mir-208-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(hg38)		 chr14: 23417997-23418053 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-208-P1-v1)		 Mir-208-P2 chr14: 23388602-23388658 [-] UCSC Ensembl
Mir-208-P1-v1 chr14: 23417997-23418053 [-] UCSC Ensembl
Mir-208-P1-v2 chr14: 23417997-23418053 [-] UCSC Ensembl
Variant

Hsa-Mir-208-P1-v1
Seed UAAGACG
Precursor
(pre-Mir +30nt flank)		 
CCCCGGCCCCACCUCCUUCUCCUCUCAGGGAAGCUUUUUGCUCGAAUUAUGUUUCUGAUCCGAAUAUAAGACGAACAAAAGGUUUGUCUGAGGGCAGAGUGCUUCCGUCUGGGGCAG
Get precursor sequence
Structure
        10          20        30        40        50        
CCCCGGCCCCACCUCCU--|  C        G          C   AA      UUCUG 
                   UCU CUCUCAGG AAGCUUUUUG UCG  UUAUGU     \
                   AGA GGGAGUCU UUUGGAAAAC AGC  AAUAUA     A
GACGGGGUCUGCCUUCGUG^  C        G          A   AG      AGCCU 
     110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Dc Dc Dr Dr Xp Xp Bl Br Br Ce Ce Co Fo He Ki Le Li Li Lu Pa Pl Pl Sk Sk Sk Sm Sp Sp St Te Th Ut
Star sequence

Hsa-Mir-208-P1-v1_5p*
mirBase accessionMIMAT0026722
Sequence 
0- AAGCUUUUUGCUCGAAUUAUGU -22
Get sequence
Proposed targets TargetScanVert: hsa-miR-208b-5p
miRDB: MIMAT0026722
Mature sequence

Hsa-Mir-208-P1-v1_3p
mirBase accessionMIMAT0004960
Sequence 
35- AUAAGACGAACAAAAGGUUUGU -57
Get sequence
Proposed targets microrna.org: MIMAT0004960
TargetScanVert: hsa-miR-208b-3p
miRDB: MIMAT0004960
Variant

Hsa-Mir-208-P1-v2
Seed AUAAGAC
Precursor
(pre-Mir +30nt flank)		 
CCCCGGCCCCACCUCCUUCUCCUCUCAGGGAAGCUUUUUGCUCGAAUUAUGUUUCUGAUCCGAAUAUAAGACGAACAAAAGGUUUGUCUGAGGGCAGAGUGCUUCCGUCUGGGGCAG
Get precursor sequence
Structure
        10          20        30        40        50        
CCCCGGCCCCACCUCCU--|  C        G          C   AA       UCUG 
                   UCU CUCUCAGG AAGCUUUUUG UCG  UUAUGUU    \
                   AGA GGGAGUCU UUUGGAAAAC AGC  AAUAUAA    A
GACGGGGUCUGCCUUCGUG^  C        G          A   AG       GCCU 
     110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Dc Dc Dr Dr Xp Xp Bl Br Br Ce Ce Co Fo He Ki Le Li Li Lu Pa Pl Pl Sk Sk Sk Sm Sp Sp St Te Th Ut
Star sequence

Hsa-Mir-208-P1-v2_5p*
mirBase accessionMIMAT0026722
Sequence 
0- AAGCUUUUUGCUCGAAUUAUGUU -23
Get sequence
Proposed targets TargetScanVert: hsa-miR-208b-5p
miRDB: MIMAT0026722
Mature sequence

Hsa-Mir-208-P1-v2_3p
mirBase accessionMIMAT0004960
Sequence 
34- UAUAAGACGAACAAAAGGUUUGU -57
Get sequence
Proposed targets microrna.org: MIMAT0004960
TargetScanVert: hsa-miR-208b-3p
miRDB: MIMAT0004960