| MirGeneDB ID | Lch-Mir-208-P1 |
|---|---|
| Family name | MIR-208 (all species) |
| Seed | UAAGACG |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-208-P2 |
| Orthologues | Bta-Mir-208-P1 Cfa-Mir-208-P1 Cpo-Mir-208-P1 Dno-Mir-208-P1 Dre-Mir-208-P1 Ebu-Mir-208-o1 Ete-Mir-208-P1a Ete-Mir-208-P1b Gmo-Mir-208-P1 Hsa-Mir-208-P1 Loc-Mir-208-P1c Loc-Mir-208-P1d Loc-Mir-208-P1e Mal-Mir-208-P1 Mdo-Mir-208-P1 Mml-Mir-208-P1 Mmu-Mir-208-P1 Mun-Mir-208-P1 Ocu-Mir-208-P1 Rno-Mir-208-P1 Sha-Mir-208-P1 Sto-Mir-208-P1 |
| Node of Origin (locus) | Vertebrata |
| Node of Origin (family) | Vertebrata |
| Genome context (LatCha1_add) |
JH126769.1: 718600-718655 [+] Ensembl |
| Precursor (pre-Mir +30nt flank) | CCAGGACCAAGACUGCUUCUCCUCACAGGGAGGCUUUUUGUUCGCGUUAUGUUCGGUGUGAAAUAUAAGACGAACAAAAAGUUUGUCUGUUUGUAGAUUUUGCUGCUGGGGGAAUCGet precursor sequence |
| Structure | 10 20 30 40 50 CCAGGACCAAGACUGCU--| CCUC G CG UCGG UCU ACAGG AGGCUUUUUGUUCG UUAUGU U AGA UGUCU UUUGAAAAACAAGC AAUAUA G CUAAGGGGGUCGUCGUUUU^ UGUU G AG AAGU 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Lch-Mir-208-P1_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- AGGCUUUUUGUUCGCGUUAUGU -22
Get sequence
|
| Mature sequence | Lch-Mir-208-P1_3p (predicted) |
| mirBase accession | None |
| Sequence |
34- AUAAGACGAACAAAAAGUUUGU -56
Get sequence
|
