MirGeneDB 3.0
MirGeneDB ID

Loc-Mir-208-P1c

Family name MIR-208 (all species)
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-208-P1d  Loc-Mir-208-P1e 
Orthologues Bta-Mir-208-P1-v1  Cfa-Mir-208-P1-v1  Cja-Mir-208-P1  Cpo-Mir-208-P1-v1  Dno-Mir-208-P1-v1  Dre-Mir-208-P1  Ebu-Mir-208-o1  Eca-Mir-208-P1-v1  Gmo-Mir-208-P1  Hsa-Mir-208-P1-v1  Laf-Mir-208-P1  Lch-Mir-208-P1  Mal-Mir-208-P1  Mdo-Mir-208-P1  Mml-Mir-208-P1-v1  Mmr-Mir-208-P1-v1  Mmu-Mir-208-P1-v1  Mun-Mir-208-P1  Neu-Mir-208-P1  Ocu-Mir-208-P1-v1  Pab-Mir-208-P1  Rno-Mir-208-P1-v1  Sha-Mir-208-P1  Sto-Mir-208-P1 
Node of Origin (locus) L. oculatus
Node of Origin (family) Vertebrata
Genome context
(LepOcu1)		 JH591418.1: 223464-223519 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-208-P1c)		 Mir-208-P1d JH591418.1: 188359-188414 [-] Ensembl
Mir-208-P1c JH591418.1: 223464-223519 [-] Ensembl
Seed UAAGACG
Precursor
(pre-Mir +30nt flank)		 
GGUGCUGUUUCAUUUGUUCUCCUGACAGAUAAGCUUUUUGUUUGCGUUAUGUUUAAAUUAGAAUAUAAGACGAACAAAAAGUUUGUCUGUUUGCAGACUGUACGACUGUGCGUGUG
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Structure
        10          20        30        40        50       
GGUGCUGUUUCAUUUGU--|  CCU                     CG      UUAA 
                   UCU   GACAGAUAAGCUUUUUGUUUG  UUAUGU    A
                   AGA   UUGUCUGUUUGAAAAACAAGC  AAUAUA    U
GUGUGCGUGUCAGCAUGUC^  CGU                     AG      AGAU 
    110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Star sequence

Loc-Mir-208-P1c_5p*
mirBase accessionNone
Sequence 
0- AAGCUUUUUGUUUGCGUUAUGU -22
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Mature sequence

Loc-Mir-208-P1c_3p
mirBase accessionNone
Sequence 
34- AUAAGACGAACAAAAAGUUUGU -56
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