MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-208-P1

Family name MIR-208 (all species)
Species Horse (Equus caballus)
MiRBase ID eca-mir-208b
Paralogues Eca-Mir-208-P2 
Orthologues Bta-Mir-208-P1-v1  Cfa-Mir-208-P1-v1  Cja-Mir-208-P1  Cpo-Mir-208-P1-v1  Dno-Mir-208-P1-v1  Dre-Mir-208-P1  Ebu-Mir-208-o1  Ete-Mir-208-P1a  Ete-Mir-208-P1b  Gmo-Mir-208-P1  Hsa-Mir-208-P1-v1  Laf-Mir-208-P1  Lch-Mir-208-P1  Loc-Mir-208-P1c  Loc-Mir-208-P1d  Loc-Mir-208-P1e  Mal-Mir-208-P1  Mdo-Mir-208-P1  Mml-Mir-208-P1-v1  Mmr-Mir-208-P1-v1  Mmu-Mir-208-P1-v1  Mun-Mir-208-P1  Neu-Mir-208-P1  Ocu-Mir-208-P1-v1  Pab-Mir-208-P1  Rno-Mir-208-P1-v1  Sha-Mir-208-P1  Sto-Mir-208-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009148.1: 163306881-163306937 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-208-P1-v1)		 Mir-208-P2 CM009148.1: 163278781-163278837 [-] UCSC Ensembl
Mir-208-P1-v1 CM009148.1: 163306881-163306937 [-] UCSC Ensembl
Mir-208-P1-v2 CM009148.1: 163306881-163306937 [-] UCSC Ensembl
Variant

Eca-Mir-208-P1-v1
Seed UAAGACG
Precursor
(pre-Mir +30nt flank)		 
CUGCCCUGCCCCCUCCUUCUCCUCUCAGGGAAGCUUUUUGCUCGCGUUAUGUUUCUCAUCCGAAUAUAAGACGAACAAAAGGUUUGUCUGAGGGCAGAGUGCUCCCACCCGGGGCAG
Get precursor sequence
Structure
        10          20        30        40        50        
CUGCCCUGCCCCCUCCU--|  C        G          C   CG      UUCUC 
                   UCU CUCUCAGG AAGCUUUUUG UCG  UUAUGU     \
                   AGA GGGAGUCU UUUGGAAAAC AGC  AAUAUA     A
GACGGGGCCCACCCUCGUG^  C        G          A   AG      AGCCU 
     110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Star sequence

Eca-Mir-208-P1-v1_5p*
mirBase accessionNone
Sequence 
0- AAGCUUUUUGCUCGCGUUAUGU -22
Get sequence
Mature sequence

Eca-Mir-208-P1-v1_3p
mirBase accessionMIMAT0012900
Sequence 
35- AUAAGACGAACAAAAGGUUUGU -57
Get sequence
Variant

Eca-Mir-208-P1-v2
Seed AUAAGAC
Precursor
(pre-Mir +30nt flank)		 
CUGCCCUGCCCCCUCCUUCUCCUCUCAGGGAAGCUUUUUGCUCGCGUUAUGUUUCUCAUCCGAAUAUAAGACGAACAAAAGGUUUGUCUGAGGGCAGAGUGCUCCCACCCGGGGCAG
Get precursor sequence
Structure
        10          20        30        40        50        
CUGCCCUGCCCCCUCCU--|  C        G          C   CG       UCUC 
                   UCU CUCUCAGG AAGCUUUUUG UCG  UUAUGUU    \
                   AGA GGGAGUCU UUUGGAAAAC AGC  AAUAUAA    A
GACGGGGCCCACCCUCGUG^  C        G          A   AG       GCCU 
     110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Star sequence

Eca-Mir-208-P1-v2_5p*
mirBase accessionNone
Sequence 
0- AAGCUUUUUGCUCGCGUUAUGUU -23
Get sequence
Mature sequence

Eca-Mir-208-P1-v2_3p
mirBase accessionMIMAT0012900
Sequence 
34- UAUAAGACGAACAAAAGGUUUGU -57
Get sequence