MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-208-P2

Family name MIR-208 (all species)
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-208-P1 
Orthologues Aca-Mir-208-P2  Ami-Mir-208-P2  Bta-Mir-208-P2  Cfa-Mir-208-P2  Cpi-Mir-208-P2  Cpo-Mir-208-P2  Dno-Mir-208-P2  Eca-Mir-208-P2  Ete-Mir-208-P2  Gja-Mir-208-P2  Hsa-Mir-208-P2  Laf-Mir-208-P2  Lch-Mir-208-P2  Mdo-Mir-208-P2  Mml-Mir-208-P2  Mmu-Mir-208-P2  Oan-Mir-208-P2  Ocu-Mir-208-P2  Pab-Mir-208-P2  Pbv-Mir-208-P2  Rno-Mir-208-P2  Sha-Mir-208-P2  Spt-Mir-208-P2  Xla-Mir-208-P2a  Xla-Mir-208-P2b  Xtr-Mir-208-P2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021924.1: 53549688-53549744 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-208-P2)		 Mir-208-P2 CM021924.1: 53549688-53549744 [-] UCSC Ensembl
Mir-208-P1 CM021924.1: 53578788-53578844 [-] UCSC Ensembl
Seed UAAGACG
Precursor
(pre-Mir +30nt flank)		 
GCUGGCCCUGACCCACUUCCUGUGACGGGCGAGCUUUUGGCCCGGGUUAUACCUGAUGCUCACGUAUAAGACGAGCAAAAAGCUUGUUGGUCAGAGGAGCUACCGUCGAUCAGCCUG
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Structure
        10          20        30        40        50        
GCUGGCCCUGACCCACU--|   G    G           G  C  GG      CUGAU 
                   UCCU UGAC GGCGAGCUUUU GC CG  UUAUAC     \
                   AGGA ACUG UUGUUCGAAAA CG GC  AAUAUG     G
GUCCGACUAGCUGCCAUCG^   G    G           A  A  AG      CACUC 
     110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Star sequence

Cja-Mir-208-P2_5p* (predicted)
mirBase accessionNone
Sequence 
0- GAGCUUUUGGCCCGGGUUAUAC -22
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Mature sequence

Cja-Mir-208-P2_3p (predicted)
mirBase accessionNone
Sequence 
35- AUAAGACGAGCAAAAAGCUUGU -57
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