MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-208-P2

Family name MIR-208 (all species)
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-208a
Paralogues Rno-Mir-208-P1-v1 
Orthologues Aca-Mir-208-P2  Ami-Mir-208-P2  Bta-Mir-208-P2  Cfa-Mir-208-P2  Cja-Mir-208-P2  Cpi-Mir-208-P2  Cpo-Mir-208-P2  Dno-Mir-208-P2  Eca-Mir-208-P2  Ete-Mir-208-P2  Gja-Mir-208-P2  Hsa-Mir-208-P2  Laf-Mir-208-P2  Lch-Mir-208-P2  Mdo-Mir-208-P2  Mml-Mir-208-P2  Mmu-Mir-208-P2  Oan-Mir-208-P2  Ocu-Mir-208-P2  Pab-Mir-208-P2  Pbv-Mir-208-P2  Sha-Mir-208-P2  Spt-Mir-208-P2  Xla-Mir-208-P2a  Xla-Mir-208-P2b  Xtr-Mir-208-P2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(rn6)		 chr15: 33613463-33613519 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-208-P2)		 Mir-208-P2 chr15: 33613463-33613519 [-] UCSC Ensembl
Mir-208-P1-v1 chr15: 33639539-33639595 [-] UCSC Ensembl
Mir-208-P1-v2 chr15: 33639539-33639595 [-] UCSC Ensembl
Seed UAAGACG
Precursor
(pre-Mir +30nt flank)		 
GCUGACCCUUGCUUACUUCCUUUGACGGGUGAGCUUUUGGCCCGGGUUAUACCUGACUCUCACGUAUAAGACGAGCAAAAAGCUUGUUGGUCAGAGGAGCUAUCGUCUCUCAGCCUG
Get precursor sequence
Structure
        10          20        30        40        50        
GCUGACCCUUGCUUACU--|        G  UG       G  C  GG      CUGAC 
                   UCCUUUGAC GG  AGCUUUU GC CG  UUAUAC     \
                   AGGAGACUG UU  UCGAAAA CG GC  AAUAUG     U
GUCCGACUCUCUGCUAUCG^        G  GU       A  A  AG      CACUC 
     110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
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Star sequence

Rno-Mir-208-P2_5p*
mirBase accessionMIMAT0017155
Sequence 
0- GAGCUUUUGGCCCGGGUUAUAC -22
Get sequence
Proposed targets TargetScanVert: rno-miR-208a-5p
miRDB: MIMAT0017155
Mature sequence

Rno-Mir-208-P2_3p
mirBase accessionMIMAT0000880
Sequence 
35- AUAAGACGAGCAAAAAGCUUGU -57
Get sequence
Proposed targets microrna.org: MIMAT0000880
TargetScanVert: rno-miR-208a-3p
miRDB: MIMAT0000880