MirGeneDB 2.1
MirGeneDB ID

Rno-Mir-1306

Family name MIR-1306 (all species)
Seed CACCUCC
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-1306
Paralogues
Orthologues Aca-Mir-1306  Ami-Mir-1306  Bta-Mir-1306  Cfa-Mir-1306  Cli-Mir-1306  Cmi-Mir-1306  Cpi-Mir-1306  Cpo-Mir-1306  Dno-Mir-1306  Dre-Mir-1306  Ete-Mir-1306  Gga-Mir-1306  Gja-Mir-1306  Gmo-Mir-1306  Hsa-Mir-1306  Lch-Mir-1306  Loc-Mir-1306  Mal-Mir-1306  Mdo-Mir-1306  Mml-Mir-1306  Mmu-Mir-1306  Mun-Mir-1306  Oan-Mir-1306  Ocu-Mir-1306  Pbv-Mir-1306  Sha-Mir-1306  Spt-Mir-1306  Sto-Mir-1306  Tgu-Mir-1306  Tni-Mir-1306  Xla-Mir-1306-P1a  Xla-Mir-1306-P1b  Xtr-Mir-1306 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(rn6)		 chr11: 86857641-86857701 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-1306)		 Mir-185 chr11: 86812715-86812769 [+] UCSC Ensembl
Mir-1306 chr11: 86857641-86857701 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUCCAAGUGCUGCCCCAUGAACAGUCUCCACCACCUCCCCUGCAAACGUCCAGUGAUGCAGAGGUAAUGGACGUUGGCUCUGGUGGUGAUGGACAGUCCGAACCUCCUGCCGACGACCCAU
Get precursor sequence
Structure
        10            20         30        40        50          
UUCCAAGUGCUGCCCCA----  A  A    C-|      UCCCCU  A        GUGAUGC 
                     UG AC GUCU  CACCACC      GC AACGUCCA       \
                     GC UG CAGG  GUGGUGG      CG UUGCAGGU       A
UACCCAGCAGCCGUCCUCCAA  C  A    UA^      UCU---  G        AAUGGAG 
 .       110       100        90        80           70
Deep sequencing
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CommentMir-1306 is an usual miRNA as it is derived from the 5'-most coding-exon of the DGCR8 gene.
3' NTU Yes
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Ad Ad Br Br Br Ce Ce Ce Ce Co Co Co Co Dr Dr Du Du Du Du He He Hi Hi Il Il Je Je Ki Ki Ki Ki Li Li Li Li Me Me Mu Mu Mu Mu Mu Mu Mu Mu Ov Pa Pa St St St Te Ut Wh Br Fa He Ki La Li Li Lu Mu Pa Sk Sm Sp St Te Th
Mature sequence

Rno-Mir-1306_5p
mirBase accessionMIMAT0024851
Sequence 
0- CCACCUCCCCUGCAAACGUCCA -22
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Proposed targets TargetScanVert: rno-miR-1306-5p
miRDB: MIMAT0024851
Star sequence

Rno-Mir-1306_3p*
mirBase accessionMIMAT0024852
Sequence 
39- GACGUUGGCUCUGGUGGUGAUG -61
Get sequence
Proposed targets TargetScanVert: rno-miR-1306-3p
miRDB: MIMAT0024852