MirGeneDB 2.1

MirGeneDB ID

Mmu-Mir-1306

Family name MIR-1306 (all species)
Seed CACCUCC
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-1306
Paralogues
Orthologues Aca-Mir-1306  Ami-Mir-1306  Bta-Mir-1306  Cfa-Mir-1306  Cli-Mir-1306  Cmi-Mir-1306  Cpi-Mir-1306  Cpo-Mir-1306  Dno-Mir-1306  Dre-Mir-1306  Ete-Mir-1306  Gga-Mir-1306  Gja-Mir-1306  Gmo-Mir-1306  Hsa-Mir-1306  Lch-Mir-1306  Loc-Mir-1306  Mal-Mir-1306  Mdo-Mir-1306  Mml-Mir-1306  Mun-Mir-1306  Oan-Mir-1306  Ocu-Mir-1306  Pbv-Mir-1306  Rno-Mir-1306  Sha-Mir-1306  Spt-Mir-1306  Sto-Mir-1306  Tgu-Mir-1306  Tni-Mir-1306  Xla-Mir-1306-P1a  Xla-Mir-1306-P1b  Xtr-Mir-1306 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(mm10)
chr16: 18284248-18284308 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-1306)
Mir-1306 chr16: 18284248-18284308 [-] UCSC Ensembl
Mir-185 chr16: 18327405-18327459 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUCCAAGUGCUGCCCCAUGAACAGUCUCCACCACCUCCCCUGCAAACGUCCAGUGAUGCAGAGGUAAUGGACGUUGGCUCUGGUGGUGAUGGACAGUCCGAACCUCCUGCCGACGACCCAU
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Structure
        10            20         30        40        50          
UUCCAAGUGCUGCCCCA----  A  A    C-|      UCCCCU  A        GUGAUGC 
                     UG AC GUCU  CACCACC      GC AACGUCCA       \
                     GC UG CAGG  GUGGUGG      CG UUGCAGGU       A
UACCCAGCAGCCGUCCUCCAA  C  A    UA^      UCU---  G        AAUGGAG 
 .       110       100        90        80           70
Deep sequencing
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CommentMir-1306 is an usual miRNA as it is derived from the 5'-most coding-exon of the DGCR8 gene.
3' NTU Yes
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Bo Br Br Ce Em Em He In Ki Li Lu Mu Ov Pa Sk Sp Sp Te
Mature sequence

Mmu-Mir-1306_5p

mirBase accessionMIMAT0019136
Sequence
0- CCACCUCCCCUGCAAACGUCCA -22
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Proposed targets miRDB: MIMAT0019136
Star sequence

Mmu-Mir-1306_3p*

mirBase accessionMIMAT0009411
Sequence
39- GACGUUGGCUCUGGUGGUGAUG -61
Get sequence
Proposed targets microrna.org: MIMAT0009411
TargetScanVert: mmu-miR-1306-3p
miRDB: MIMAT0009411