| MirGeneDB ID | Lch-Mir-1306 |
|---|---|
| Family name | MIR-1306 (all species) |
| Seed | CACCUCC |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Aca-Mir-1306 Ami-Mir-1306 Bta-Mir-1306 Cfa-Mir-1306 Cli-Mir-1306 Cmi-Mir-1306 Cpi-Mir-1306 Cpo-Mir-1306 Dno-Mir-1306 Dre-Mir-1306 Ete-Mir-1306 Gga-Mir-1306 Gja-Mir-1306 Gmo-Mir-1306 Hsa-Mir-1306 Loc-Mir-1306 Mal-Mir-1306 Mdo-Mir-1306 Mml-Mir-1306 Mmu-Mir-1306 Mun-Mir-1306 Oan-Mir-1306 Ocu-Mir-1306 Pbv-Mir-1306 Rno-Mir-1306 Sha-Mir-1306 Spt-Mir-1306 Sto-Mir-1306 Tgu-Mir-1306 Tni-Mir-1306 Xla-Mir-1306-P1a Xla-Mir-1306-P1b Xtr-Mir-1306 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Gnathostomata |
| Genome context (LatCha1_add) |
JH126620.1: 2119645-2119705 [+] Ensembl |
| Precursor (pre-Mir +30nt flank) | CCACCUCUACCGCCAAAUCAACAGCCUCCACCACCUCCCCUGCAAACGUCCAGUGACGCAGAGCUAAUGGACGUUGGCUCCGGUGGUGAUGGACAAUUUGUCACCCCAGCUGGGGACUCUAGet precursor sequence |
| Structure | 10 20 30 40 50 CCACCUCUACCGCCAAAUCA CC--| C U CCU A GUGACGC ACAG UCCA CACC CC GC AACGUCCA \ UGUU AGGU GUGG GG CG UUGCAGGU A AUCUCAGGGGUCGACCCCAC UAAC^ A U CCU G AAUCGAG . 110 100 90 80 70 |
| Deep sequencing | |
| Comment | Mir-1306 is an usual miRNA as it is derived from the 5'-most coding-exon of the DGCR8 gene. |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17), UGUG in loop |
| Mature sequence | Lch-Mir-1306_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- CCACCUCCCCUGCAAACGUCCA -22
Get sequence
|
| Star sequence | Lch-Mir-1306_3p* (predicted) |
| mirBase accession | None |
| Sequence |
39- GACGUUGGCUCCGGUGGUGAUG -61
Get sequence
|
