Mir-1306

MirGeneDB ID

Mml-Mir-1306

Family name

MIR-1306 (all species)

Species

Rhesus monkey (Macaca mulatta)

MiRBase ID

mml-mir-1306

Paralogues

Orthologues

Aca-Mir-1306 Ami-Mir-1306 Bta-Mir-1306 Cfa-Mir-1306 Cja-Mir-1306 Cli-Mir-1306 Cmi-Mir-1306 Cpi-Mir-1306 Cpo-Mir-1306 Dno-Mir-1306 Dre-Mir-1306 Eca-Mir-1306 Ete-Mir-1306 Gga-Mir-1306 Gja-Mir-1306 Gmo-Mir-1306 Hsa-Mir-1306 Laf-Mir-1306 Lch-Mir-1306 Loc-Mir-1306 Mal-Mir-1306 Mdo-Mir-1306 Mmr-Mir-1306 Mmu-Mir-1306 Mun-Mir-1306 Neu-Mir-1306 Oan-Mir-1306 Ocu-Mir-1306 Pab-Mir-1306 Pbv-Mir-1306 Rno-Mir-1306 Sha-Mir-1306 Spt-Mir-1306 Sto-Mir-1306 Tgu-Mir-1306 Tni-Mir-1306 Xla-Mir-1306-P1a Xla-Mir-1306-P1b Xtr-Mir-1306

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Gnathostomata

Genome context
(GCA_003339765.3_Mmul_10_traces)

CM014345.1: 32546735-32546795 [-] UCSC Ensembl

Seed

CACCUCC

Precursor
(pre-Mir +30nt flank)

UUCCAAGCGCUGCCCCGUGAGCAGUCUCCACCACCUCCCCUGCAAACGUCCAGUGGUGCAGAGGUAAUGGACGUUGGCUCUGGUGGUGAUGGACAGUCCGAACUCCCUGCCGAGGACCCCU

Get precursor sequence

Structure

        10            20         30        40        50          
UUCCAAGCGCUGCCCCG----  AG A    C-|      UCCCCU  A        GUGGUGC 
                     UG  C GUCU  CACCACC      GC AACGUCCA       \
                     GC  G CAGG  GUGGUGG      CG UUGCAGGU       A
UCCCCAGGAGCCGUCCCUCAA  CU A    UA^      UCU---  G        AAUGGAG 
 .       110       100        90        80           70

Deep sequencing

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Comment

Mir-1306 is an unusual miRNA as it is derived from the 5'-most coding-exon of the DGCR8 gene.

3' NTU

Yes

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Bo	Br	Br	Br	He	Ki	Li	Lu	Ly	Sk	Sp	Te	Th

Mature sequence

Mml-Mir-1306_5p

mirBase accession

MIMAT0028240

Sequence

0- CCACCUCCCCUGCAAACGUCCA -22

Get sequence

Proposed targets

TargetScanVert: mml-miR-1306-5p

Star sequence

Mml-Mir-1306_3p*

mirBase accession

MIMAT0028241

Sequence

39- GACGUUGGCUCUGGUGGUGAUG -61

Get sequence

Proposed targets

TargetScanVert: mml-miR-1306-3p