MirGeneDB ID | Ocu-Mir-1306 |
Family name |
MIR-1306 (all species) |
Seed |
CACCUCC |
Species |
Rabbit (Oryctolagus cuniculus) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Aca-Mir-1306
Ami-Mir-1306
Bta-Mir-1306
Cfa-Mir-1306
Cli-Mir-1306
Cmi-Mir-1306
Cpi-Mir-1306
Cpo-Mir-1306
Dno-Mir-1306
Dre-Mir-1306
Ete-Mir-1306
Gga-Mir-1306
Gja-Mir-1306
Gmo-Mir-1306
Hsa-Mir-1306
Lch-Mir-1306
Loc-Mir-1306
Mal-Mir-1306
Mdo-Mir-1306
Mml-Mir-1306
Mmu-Mir-1306
Mun-Mir-1306
Oan-Mir-1306
Pbv-Mir-1306
Rno-Mir-1306
Sha-Mir-1306
Spt-Mir-1306
Sto-Mir-1306
Tgu-Mir-1306
Tni-Mir-1306
Xla-Mir-1306-P1a
Xla-Mir-1306-P1b
Xtr-Mir-1306
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Gnathostomata
|
Genome context (oryCun2_add) |
chrUn0128: 646580-646640 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUCCCAGCGCUGCCCCGUGAACAGUCUCCACCACCUCCCCUGCAAACGUCCAGUGAUGCAGAGGUAAUGGACGUUGGCUCUGGUGGUGAUGGACAGUCCGAACCCCCUGCUGAGGACCCCU
Get precursor sequence
|
Structure | 10 20 30 40 50
UUCCCAGCGCUGCCCCGUGAACA---- C-| UCCCCU A GUGAUGC
GUCU CACCACC GC AACGUCCA \
CAGG GUGGUGG CG UUGCAGGU A
UCCCCAGGAGUCGUCCCCCAAGCCUGA UA^ UCU--- G AAUGGAG
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | Mir-1306 is an usual miRNA as it is derived from the 5'-most coding-exon of the DGCR8 gene. |
3' NTU |
Yes
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Mature sequence |
Ocu-Mir-1306_5p |
mirBase accession | None |
Sequence |
0- CCACCUCCCCUGCAAACGUCCA -22
Get sequence
|
Star sequence |
Ocu-Mir-1306_3p* |
mirBase accession | None |
Sequence |
39- GACGUUGGCUCUGGUGGUGAUG -61
Get sequence
|