MirGeneDB 2.1
MirGeneDB ID

Ami-Mir-1306

Family name MIR-1306 (all species)
Seed CACCUCC
Species American alligator (Alligator mississippiensis)
MiRBase ID
Paralogues
Orthologues Aca-Mir-1306  Bta-Mir-1306  Cfa-Mir-1306  Cli-Mir-1306  Cmi-Mir-1306  Cpi-Mir-1306  Cpo-Mir-1306  Dno-Mir-1306  Dre-Mir-1306  Ete-Mir-1306  Gga-Mir-1306  Gja-Mir-1306  Gmo-Mir-1306  Hsa-Mir-1306  Lch-Mir-1306  Loc-Mir-1306  Mal-Mir-1306  Mdo-Mir-1306  Mml-Mir-1306  Mmu-Mir-1306  Mun-Mir-1306  Oan-Mir-1306  Ocu-Mir-1306  Pbv-Mir-1306  Rno-Mir-1306  Sha-Mir-1306  Spt-Mir-1306  Sto-Mir-1306  Tgu-Mir-1306  Tni-Mir-1306  Xla-Mir-1306-P1a  Xla-Mir-1306-P1b  Xtr-Mir-1306 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017709599.1: 1828177-1828237 [+] UCSC
Precursor
(pre-Mir +30nt flank)
CCACCUUUGCCGCCUAAUGAACAGCCUCCACCACCUCCCCUGCAAACGUCCAGUGACGCAGAGGUAAUGGACGUUGGCUCUGGUGGUGAUGGACAGUCAGAUACCCCUGCUGGGGACGCGC
Get precursor sequence
Structure
        10             20        30        40        50          
CCACCUUUGCCGCCUAA-----|  ACAG  UC       UCCCCU  A        GUGACGC 
                      UGA    CC  CACCACC      GC AACGUCCA       \
                      ACU    GG  GUGGUGG      CG UUGCAGGU       A
CGCGCAGGGGUCGUCCCCAUAG^  GACA  UA       UCU---  G        AAUGGAG 
 .       110       100        90        80           70
Deep sequencing
Go to detailed chart
CommentMir-1306 is an usual miRNA as it is derived from the 5'-most coding-exon of the DGCR8 gene.
3' NTU Unknown
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
To
Mature sequence

Ami-Mir-1306_5p
mirBase accessionNone
Sequence 
0- CCACCUCCCCUGCAAACGUCCA -22
Get sequence
Star sequence

Ami-Mir-1306_3p*
mirBase accessionNone
Sequence 
39- GACGUUGGCUCUGGUGGUGAUG -61
Get sequence