Mir-1990-P2

MirGeneDB ID

Pdu-Mir-1990-P2

Family name

MIR-1990 (all species)

Species

Dumerils clam worm (Platynereis dumerilii)

MiRBase ID

Paralogues

Pdu-Mir-1990-P1 Pdu-Mir-1990-P2-as

Orthologues

Agr-Mir-1990-P2 Cte-Mir-1990-P2 Cte-Mir-1990-P2-as Eba-Mir-1990-P2 Efe-Mir-1990-P2 Hru-Mir-1990-P2 Lan-Mir-1990-P2 Lgi-Mir-1990-P2 Mgi-Mir-1990-P2 Mom-Mir-1990-P2 Npo-Mir-1990-P2 Ofu-Mir-1990-P2 Pve-Mir-1990-P2a1 Pve-Mir-1990-P2a2 Pve-Mir-1990-P2b Pve-Mir-1990-P2c Pve-Mir-1990-P2d Pve-Mir-1990-P2e Rph-Mir-1990-P2 War-Mir-1990-P2

Node of Origin (locus)

Lophotrochozoa

Node of Origin (family)

Lophotrochozoa

Genome context
(GCA_026936325.1_EMBL_pdum_1.0)

JAPTHN010000010.1: 42046324-42046380 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-1990-P2)

Mir-2692 JAPTHN010000010.1: 42044738-42044800 [+] Ensembl
Mir-1990-P2-as JAPTHN010000010.1: 42046322-42046378 [-] Ensembl
Mir-1990-P2 JAPTHN010000010.1: 42046324-42046380 [+] Ensembl
Mir-1986 JAPTHN010000010.1: 42047758-42047813 [+] Ensembl

Seed

GUAAGUU

Precursor
(pre-Mir +30nt flank)

UGUUGAAUGCUGCUGUAGCAAACCUUGGGUUGUAAGUUGACAUAGUCCCAGGGAAUAAACACACCCGGGACUACGUUAACUUCCAGCUCAUGGUAAGCUAUUUCAUCUGAAGAAGGA

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Structure

        10          20        30        40        50        
UGUUGAAUGCUGCUGUA--| AA   U       U        A       A  GAAUA 
                   GC  ACC UGGGUUG AAGUUGAC UAGUCCC GG     \
                   CG  UGG ACUCGAC UUCAAUUG AUCAGGG CC     A
AGGAAGAAGUCUACUUUAU^ AA   U       C        C       C  ACACA 
     110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

24	24	24	24	24	36	36	36	36	36	48	48	48	48	48	6d	6d	6d	6d	72	72	72	72	72

Mature sequence

Pdu-Mir-1990-P2_5p

mirBase accession

None

Sequence

0- UGUAAGUUGACAUAGUCCCAGG -22

Get sequence

Star sequence

Pdu-Mir-1990-P2_3p*

mirBase accession

None

Sequence

35- CGGGACUACGUUAACUUCCAGC -57

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