| MirGeneDB ID | Npo-Mir-1990-P2 |
|---|---|
| Family name | MIR-1990 (all species) |
| Species | Chambered Nautilus (Nautilus pompilius) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Agr-Mir-1990-P2 Cte-Mir-1990-P2 Cte-Mir-1990-P2-as Eba-Mir-1990-P2 Efe-Mir-1990-P2 Hru-Mir-1990-P2 Lan-Mir-1990-P2 Lgi-Mir-1990-P2 Mgi-Mir-1990-P2 Mom-Mir-1990-P2 Ofu-Mir-1990-P2 Pdu-Mir-1990-P2 Pdu-Mir-1990-P2-as Pve-Mir-1990-P2a1 Pve-Mir-1990-P2a2 Pve-Mir-1990-P2b Pve-Mir-1990-P2c Pve-Mir-1990-P2d Pve-Mir-1990-P2e Rph-Mir-1990-P2 War-Mir-1990-P2 |
| Node of Origin (locus) | Lophotrochozoa |
| Node of Origin (family) | Lophotrochozoa |
| Genome context (GCA_018389105_NPO) |
JACATO010001038.1: 22720-22775 [+] Ensembl |
| Clustered miRNAs (< 50kb from Mir-1990-P2) |
Mir-1990-P2
JACATO010001038.1: 22720-22775 [+]
Ensembl
Mir-1986 JACATO010001038.1: 23639-23696 [+] Ensembl |
| Seed | GGGACUA |
| Precursor (pre-Mir +30nt flank) |
UUCAUUCUAAUGCAGACAGGAAGCACGCGCAGUAAGUUGAUGGGGUCCCAGGUUGCAAACAAUCCCGGGACUACGUCAACUGCUGGCGAGUGCUUCCGCCAACUACGUCGUCGUCUGet precursor sequence |
| Structure | 10 20 30 40 50 UUCAUUCUAAUGCAGACA- G -| A GG A UUGCA GGAAGCAC CG CAGUA GUUGAUG GUCCC GG \ CCUUCGUG GC GUCGU CAACUGC CAGGG CC A UCUGCUGCUGCAUCAACCG A G^ - AU C UAACA 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Npo-Mir-1990-P2_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- AGUAAGUUGAUGGGGUCCCAGG -22
Get sequence
|
| Mature sequence | Npo-Mir-1990-P2_3p (predicted) |
| mirBase accession | None |
| Sequence |
35- CGGGACUACGUCAACUGCUGG -56
Get sequence
|
