MirGeneDB 3.0
MirGeneDB ID

Efe-Mir-1990-P2

Family name MIR-1990 (all species)
Species Common brandling worm (Eisenia fetida)
MiRBase ID
Paralogues Efe-Mir-1990-o1  Efe-Mir-1990-P1 
Orthologues Agr-Mir-1990-P2  Cte-Mir-1990-P2  Cte-Mir-1990-P2-as  Eba-Mir-1990-P2  Hru-Mir-1990-P2  Lan-Mir-1990-P2  Lgi-Mir-1990-P2  Mgi-Mir-1990-P2  Mom-Mir-1990-P2  Npo-Mir-1990-P2  Ofu-Mir-1990-P2  Pdu-Mir-1990-P2  Pdu-Mir-1990-P2-as  Pve-Mir-1990-P2a1  Pve-Mir-1990-P2a2  Pve-Mir-1990-P2b  Pve-Mir-1990-P2c  Pve-Mir-1990-P2d  Pve-Mir-1990-P2e  Rph-Mir-1990-P2  War-Mir-1990-P2 
Node of Origin (locus) Lophotrochozoa
Node of Origin (family) Lophotrochozoa
Genome context
(Efe_combined)		 scaffold3172-size40789: 4275-4334 [-]
Seed GUAAGUU
Precursor
(pre-Mir +30nt flank)		 
ACUGAUUCGUCGAUGCGUUGGAUGCGAAGUUGUAAGUUGACAUAGUCCCAGGAUACGGGAAUGAAACCCGGGACUUUAGCAACUUCCAGCUCGUCAUCCGAUCCACAGCGUUCCCCAUCC
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Structure
        10          20         30        40        50         
ACUGAUUCGUCGAUGCG--       -|  A    U      ACAU      A  AUACGG 
                   UUGGAUG CGA GUUG AAGUUG    AGUCCC GG      G
                   AGCCUAC GCU CGAC UUCAAC    UCAGGG CC      A
CCUACCCCUUGCGACACCU       U^  -    C      GAUU      C  AAAGUA 
.       110       100         90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Mature sequence

Efe-Mir-1990-P2_5p
mirBase accessionNone
Sequence 
0- UGUAAGUUGACAUAGUCCCAGG -22
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Star sequence

Efe-Mir-1990-P2_3p*
mirBase accessionNone
Sequence 
38- CGGGACUUUAGCAACUUCCAGC -60
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