MirGeneDB 3.0
MirGeneDB ID

Pve-Mir-1990-P2a2

Family name MIR-1990 (all species)
Species Vernerds tusk shell (Pictodentalium vernedei)
MiRBase ID
Paralogues Pve-Mir-1990-P2a1  Pve-Mir-1990-P2b  Pve-Mir-1990-P2c  Pve-Mir-1990-P2d  Pve-Mir-1990-P2e 
Orthologues Agr-Mir-1990-P2  Cte-Mir-1990-P2  Cte-Mir-1990-P2-as  Eba-Mir-1990-P2  Efe-Mir-1990-P2  Hru-Mir-1990-P2  Lan-Mir-1990-P2  Lgi-Mir-1990-P2  Mgi-Mir-1990-P2  Mom-Mir-1990-P2  Npo-Mir-1990-P2  Ofu-Mir-1990-P2  Pdu-Mir-1990-P2  Pdu-Mir-1990-P2-as  Rph-Mir-1990-P2  War-Mir-1990-P2 
Node of Origin (locus) Dentaliidae
Node of Origin (family) Lophotrochozoa
Genome context
(Pve_genome_chr_only)		 Pve_Chr2: 443548110-443548166 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-1990-P2a2)		 Mir-1986-P3 Pve_Chr2: 443542660-443542719 [-] Ensembl
Mir-1990-P2a2 Pve_Chr2: 443548110-443548166 [-] Ensembl
Seed GGGACUA
Precursor
(pre-Mir +30nt flank)		 
UGCUUGCAGCUUUUACUGGAGUUCUUGUGUAGUAAGUUGAUGGGGUCCCAGGUCAGUUUGUACCCCGGGACUACGUCAACUUCUGGCAUGGGUAACUCUUGGAACGACACCUGAGAU
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Structure
        10         20          30        40        50        
UGCUUGCAGCUUUUACU-      -  UG  -|  U         GG     A  UCAGU 
                  GGAGUU CU  UG UAG AAGUUGAUG  GUCCC GG     \
                  UCUCAA GG  AC GUC UUCAACUGC  CAGGG CC     U
UAGAGUCCACAGCAAGGU      U  GU  G^  -         AU     C  CAUGU 
     110       100        90         80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
To
Star sequence

Pve-Mir-1990-P2a2_5p*
mirBase accessionNone
Sequence 
0- AGUAAGUUGAUGGGGUCCCAGG -22
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Mature sequence

Pve-Mir-1990-P2a2_3p
mirBase accessionNone
Sequence 
35- CGGGACUACGUCAACUUCUGGC -57
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