Mir-1990-P2-as

MirGeneDB ID

Pdu-Mir-1990-P2-as

Family name

MIR-1990 (all species)

Species

Dumerils clam worm (Platynereis dumerilii)

MiRBase ID

Paralogues

Pdu-Mir-1990-P1 Pdu-Mir-1990-P2

Orthologues

Agr-Mir-1990-P2 Cte-Mir-1990-P2 Cte-Mir-1990-P2-as Eba-Mir-1990-P2 Efe-Mir-1990-P2 Hru-Mir-1990-P2 Lan-Mir-1990-P2 Lgi-Mir-1990-P2 Mgi-Mir-1990-P2 Mom-Mir-1990-P2 Npo-Mir-1990-P2 Ofu-Mir-1990-P2 Pve-Mir-1990-P2a1 Pve-Mir-1990-P2a2 Pve-Mir-1990-P2b Pve-Mir-1990-P2c Pve-Mir-1990-P2d Pve-Mir-1990-P2e Rph-Mir-1990-P2 War-Mir-1990-P2

Node of Origin (locus)

Pleistoannelida

Node of Origin (family)

Lophotrochozoa

Genome context
(GCA_026936325.1_EMBL_pdum_1.0)

JAPTHN010000010.1: 42046322-42046378 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-1990-P2-as)

Mir-2692 JAPTHN010000010.1: 42044738-42044800 [+] Ensembl
Mir-1990-P2-as JAPTHN010000010.1: 42046322-42046378 [-] Ensembl
Mir-1990-P2 JAPTHN010000010.1: 42046324-42046380 [+] Ensembl
Mir-1986 JAPTHN010000010.1: 42047758-42047813 [+] Ensembl

Seed

GGGACUA

Precursor
(pre-Mir +30nt flank)

CUUCUUCAGAUGAAAUAGCUUACCAUGAGCUGGAAGUUAACGUAGUCCCGGGUGUGUUUAUUCCCUGGGACUAUGUCAACUUACAACCCAAGGUUUGCUACAGCAGCAUUCAACAGC

Get precursor sequence

Structure

        10          20        30        40        50        
CUUCUUCAGAUGAAAUA--| UU   A  AGC  G     A             UGUGU 
                   GC  ACC UG   UG AAGUU ACGUAGUCCCGGG     \
                   CG  UGG AC   AC UUCAA UGUAUCAGGGUCC     U
CGACAACUUACGACGACAU^ UU   A  CCA  A     C             CUUAU 
     110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

24	24	24	24	24	36	36	36	36	36	48	48	48	48	48	6d	6d	6d	6d	72	72	72	72	72

Star sequence

Pdu-Mir-1990-P2-as_5p*

mirBase accession

None

Sequence

0- UGGAAGUUAACGUAGUCCCGGG -22

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Mature sequence

Pdu-Mir-1990-P2-as_3p

mirBase accession

None

Sequence

35- UGGGACUAUGUCAACUUACAAC -57

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