MirGeneDB 3.0
MirGeneDB ID

Pdu-Mir-1990-P1

Family name MIR-1990 (all species)
Species Dumerils clam worm (Platynereis dumerilii)
MiRBase ID
Paralogues Pdu-Mir-1990-P2  Pdu-Mir-1990-P2-as 
Orthologues Agr-Mir-1990-P1  Cte-Mir-1990-P1  Eba-Mir-1990-P1  Efe-Mir-1990-o1  Efe-Mir-1990-P1  Lan-Mir-1990-P1  Ofu-Mir-1990-P1  War-Mir-1990-P1 
Node of Origin (locus) Lophotrochozoa
Node of Origin (family) Lophotrochozoa
Genome context
(GCA_026936325.1_EMBL_pdum_1.0)		 JAPTHN010000018.1: 7382655-7382715 [+] Ensembl
Seed GUAAGUU
Precursor
(pre-Mir +30nt flank)		 
UGAAGAAGGAUAUUGUUGAAGUCGCCGAUGUGUAAGUUAACGUAGUCCAAGGUUUAUGAAAGGCAAACUUGAGAUUACGAUAACUUUCCAUCGCCGGACUUUCACGAGCGGUCGAGAAGAG
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Structure
        10          20         30        40         50         
UGAAGAAGGAUAUUGUU--     -| C     UGU      A       -    GUUUAUG 
                   GAAGU CG CGAUG   AAGUUA CGUAGUC CAAG       A
                   UUUCA GC GCUAC   UUCAAU GCAUUAG GUUC       A
GAGAAGAGCUGGCGAGCAC     G^ C     CU-      A       A    AAACGGA 
 .       110       100        90         80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
- +
24 24 24 24 24 36 36 36 36 36 48 48 48 48 48 6d 6d 6d 6d 72 72 72 72 72
Mature sequence

Pdu-Mir-1990-P1_5p
mirBase accessionNone
Sequence 
0- UGUAAGUUAACGUAGUCCAAGGUU -24
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Star sequence

Pdu-Mir-1990-P1_3p*
mirBase accessionNone
Sequence 
38- UUGAGAUUACGAUAACUUUCCAU -61
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