Mir-2692

MirGeneDB ID

Pdu-Mir-2692

Family name

MIR-2692 (all species)

Species

Dumerils clam worm (Platynereis dumerilii)

MiRBase ID

Paralogues

Orthologues

Cte-Mir-2692 Ofu-Mir-2692

Node of Origin (locus)

Annelida

Node of Origin (family)

Annelida

Genome context
(GCA_026936325.1_EMBL_pdum_1.0)

JAPTHN010000010.1: 42044738-42044800 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-2692)

Mir-2692 JAPTHN010000010.1: 42044738-42044800 [+] Ensembl
Mir-1990-P2-as JAPTHN010000010.1: 42046322-42046378 [-] Ensembl
Mir-1990-P2 JAPTHN010000010.1: 42046324-42046380 [+] Ensembl
Mir-1986 JAPTHN010000010.1: 42047758-42047813 [+] Ensembl

Seed

CAGUCAA

Precursor
(pre-Mir +30nt flank)

GGACUUGGUUUACAUUUGGGGUUUUGCUAGGGUGAUGUCCCAUUGACUUUGGUGGGAUUUUGUAAAACACCAGUCAAUGUUGACACCACCGCUGGUAGAACUCCUGUAUCAUCAUCAUCAUCA

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Structure

        10          20        30         40         50        60 
GGACUUGGUUUACAUUU--             -    A    C-|       UU    GGAUUU 
                   GGGGUUUUGCUAG GGUG UGUC  CAUUGACU  GGUG      \
                   CCUCAAGAUGGUC CCAC ACAG  GUAACUGA  CCAC      U
ACUACUACUACUACUAUGU             G    C    UU^       --    AAAAUG 
 120       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

24	24	24	24	24	36	36	36	36	36	48	48	48	48	48	6d	6d	6d	6d	72	72	72	72	72

Star sequence

Pdu-Mir-2692_5p*

mirBase accession

None

Sequence

0- GGUGAUGUCCCAUUGACUUUGGUG -24

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Mature sequence

Pdu-Mir-2692_3p

mirBase accession

None

Sequence

39- CCAGUCAAUGUUGACACCACCGCU -63

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