Mir-205-P4-as

MirGeneDB ID

Loc-Mir-205-P4-as

Family name

MIR-205 (all species)

Species

Spotted gar (Lepisosteus oculatus)

MiRBase ID

Paralogues

Loc-Mir-205-P1 Loc-Mir-205-P4

Orthologues

Aca-Mir-205-P4 Ami-Mir-205-P4 Bta-Mir-205-P4 Cfa-Mir-205-P4 Cja-Mir-205-P4 Cli-Mir-205-P4 Cmi-Mir-205-P4 Cpi-Mir-205-P4 Cpo-Mir-205-P4 Dno-Mir-205-P4 Dre-Mir-205-P4a Eca-Mir-205-P4 Ete-Mir-205-P4 Gga-Mir-205-P4 Gja-Mir-205-P4 Gmo-Mir-205-P4a Gmo-Mir-205-P4b Hsa-Mir-205-P4 Laf-Mir-205-P4 Lch-Mir-205-P4 Mal-Mir-205-P4a Mal-Mir-205-P4b Mdo-Mir-205-P4 Mml-Mir-205-P4 Mmr-Mir-205-P4 Mmu-Mir-205-P4 Mun-Mir-205-P4 Neu-Mir-205-P4 Oan-Mir-205-P4 Ocu-Mir-205-P4 Pab-Mir-205-P4 Pbv-Mir-205-P4 Rno-Mir-205-P4 Sha-Mir-205-P4 Spt-Mir-205-P4 Sto-Mir-205-P4 Tgu-Mir-205-P4 Tni-Mir-205-P4a Xla-Mir-205-P4c Xla-Mir-205-P4d Xtr-Mir-205-P4

Node of Origin (locus)

L. oculatus

Node of Origin (family)

Vertebrata

Genome context
(LepOcu1)

LG3: 30391197-30391254 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-205-P4-as)

Mir-205-P4 LG3: 30391194-30391253 [-] Ensembl
Mir-205-P4-as LG3: 30391197-30391254 [+] Ensembl

Seed

CUUCACA

Precursor
(pre-Mir +30nt flank)

UUCCUGACGAGUGAGCUCCAUGUCUCUUACACUUCACACCACUGAAAUCUGAUUGGUUAAAGACACAGACUCCGGUGGAAUGAAGGAUAGAAUUCAUGGACAUUUCUGAAGAGAAAGU

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Structure

        10          20         30        40        50        
UUCCUGACGAGUGAGCU--     UC-|  UACA     CA      AAA    AUUGGU 
                   CCAUG   UCU    CUUCA  CCACUG   UCUG      U
                   GGUAC   AGA    GAAGU  GGUGGC   AGAC      A
UGAAAGAGAAGUCUUUACA     UUA^  UAG-     AA      CUC    ACAGAA 
      110       100        90         80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Br	Br	He	He	He	He	Ov	Ov	Ov	Ov	Te	Te	Te	Te	To

Mature sequence

Loc-Mir-205-P4-as_5p

mirBase accession

None

Sequence

0- ACUUCACACCACUGAAAUCUGA -22

Get sequence

Star sequence

Loc-Mir-205-P4-as_3p*

mirBase accession

None

Sequence

36- AGACUCCGGUGGAAUGAAGGAU -58

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