Mir-205-P4

MirGeneDB ID

Ami-Mir-205-P4

Family name

MIR-205 (all species)

Seed

CCUUCAU

Species

American alligator (Alligator mississippiensis)

MiRBase ID

ami-mir-205a

Paralogues

Ami-Mir-205-P2

Orthologues

Aca-Mir-205-P4 Bta-Mir-205-P4 Cfa-Mir-205-P4 Cli-Mir-205-P4 Cmi-Mir-205-P4 Cpi-Mir-205-P4 Cpo-Mir-205-P4 Dno-Mir-205-P4 Dre-Mir-205-P4a Ete-Mir-205-P4 Gga-Mir-205-P4 Gja-Mir-205-P4 Gmo-Mir-205-P4a Gmo-Mir-205-P4b Hsa-Mir-205-P4 Lch-Mir-205-P4 Loc-Mir-205-P4 Loc-Mir-205-P4-as Mal-Mir-205-P4a Mal-Mir-205-P4b Mdo-Mir-205-P4 Mml-Mir-205-P4 Mmu-Mir-205-P4 Mun-Mir-205-P4 Oan-Mir-205-P4 Ocu-Mir-205-P4 Pbv-Mir-205-P4 Rno-Mir-205-P4 Sha-Mir-205-P4 Spt-Mir-205-P4 Sto-Mir-205-P4 Tgu-Mir-205-P4 Tni-Mir-205-P4a Xla-Mir-205-P4c Xla-Mir-205-P4d Xtr-Mir-205-P4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)

NW_017713418.1: 182498-182556 [-] UCSC

Precursor
(pre-Mir +30nt flank)

UGAGUUAAGAAUGAUCCAUGGAUUCUGUUGUCCUUCAUUCCACCGGAGUCUGUCUCAUACCUAAUCAGAUUUCAGUGGAGUGAAGCACAAGAGACAUGGAGUUGAAUCAGCAACGAGAG

Get precursor sequence

Structure

        10        20          30        40        50         
UGAGUUAAGAAUGAUCCAUGGAU--|  G    C           C        UCUCAU 
                         UCU UUGU CUUCAUUCCAC GGAGUCUG      \
                         AGA AACA GAAGUGAGGUG CUUUAGAC      A
GAGAGCAACGACUAAGUUGAGGUAC^  G    C           A        UAAUCC 
       110       100        90        80        70        60