Mir-205-P4

MirGeneDB ID

Ocu-Mir-205-P4

Family name

MIR-205 (all species)

Species

Rabbit (Oryctolagus cuniculus)

MiRBase ID

ocu-mir-205

Paralogues

Orthologues

Aca-Mir-205-P4 Ami-Mir-205-P4 Bta-Mir-205-P4 Cfa-Mir-205-P4 Cja-Mir-205-P4 Cli-Mir-205-P4 Cmi-Mir-205-P4 Cpi-Mir-205-P4 Cpo-Mir-205-P4 Dno-Mir-205-P4 Dre-Mir-205-P4a Eca-Mir-205-P4 Ete-Mir-205-P4 Gga-Mir-205-P4 Gja-Mir-205-P4 Gmo-Mir-205-P4a Gmo-Mir-205-P4b Hsa-Mir-205-P4 Laf-Mir-205-P4 Lch-Mir-205-P4 Loc-Mir-205-P4 Loc-Mir-205-P4-as Mal-Mir-205-P4a Mal-Mir-205-P4b Mdo-Mir-205-P4 Mml-Mir-205-P4 Mmr-Mir-205-P4 Mmu-Mir-205-P4 Mun-Mir-205-P4 Neu-Mir-205-P4 Oan-Mir-205-P4 Pab-Mir-205-P4 Pbv-Mir-205-P4 Rno-Mir-205-P4 Sha-Mir-205-P4 Spt-Mir-205-P4 Sto-Mir-205-P4 Tgu-Mir-205-P4 Tni-Mir-205-P4a Xla-Mir-205-P4c Xla-Mir-205-P4d Xtr-Mir-205-P4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(oryCun2_add)

chr16: 63274211-63274269 [-] UCSC Ensembl

Seed

CCUUCAU

Precursor
(pre-Mir +30nt flank)

CAGCCCUCGACCAUCCAUGCGCUUCUCUUGUCCUUCAUUCCACCGGAGUCUGUCUCAUACCCAACCAGAUUUCAGUGGAGUGAAGUUCAGGAGGCAUGGAGCUGGCGACGACCACAGUG

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Structure

        10        20            30        40        50         
CAGCCCUCGACCAUCCAUGC----| UU      UC           C        UCUCAU 
                        GC  CUCUUG  CUUCAUUCCAC GGAGUCUG      \
                        CG  GAGGAC  GAAGUGAGGUG CUUUAGAC      A
GUGACACCAGCAGCGGUCGAGGUA^ --      UU           A        CAACCC 
       110       100          90        80        70        60

Deep sequencing

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Comment

There is a second Dicer cut +1 on the 5p arm.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

He	Ki	Te	To	Wh

Mature sequence

Ocu-Mir-205-P4_5p

mirBase accession

MIMAT0048325

Sequence

0- UCCUUCAUUCCACCGGAGUCUG -22

Get sequence

Star sequence

Ocu-Mir-205-P4_3p*

mirBase accession

MIMAT0048326

Sequence

37- GAUUUCAGUGGAGUGAAGUUCA -59

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