MirGeneDB 3.0
MirGeneDB ID

Dre-Mir-205-P4a

Family name MIR-205 (all species)
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-205
Paralogues
Orthologues Aca-Mir-205-P4  Ami-Mir-205-P4  Bta-Mir-205-P4  Cfa-Mir-205-P4  Cja-Mir-205-P4  Cli-Mir-205-P4  Cmi-Mir-205-P4  Cpi-Mir-205-P4  Cpo-Mir-205-P4  Dno-Mir-205-P4  Eca-Mir-205-P4  Ete-Mir-205-P4  Gga-Mir-205-P4  Gja-Mir-205-P4  Gmo-Mir-205-P4a  Hsa-Mir-205-P4  Laf-Mir-205-P4  Lch-Mir-205-P4  Loc-Mir-205-P4  Loc-Mir-205-P4-as  Mal-Mir-205-P4a  Mdo-Mir-205-P4  Mml-Mir-205-P4  Mmr-Mir-205-P4  Mmu-Mir-205-P4  Mun-Mir-205-P4  Neu-Mir-205-P4  Oan-Mir-205-P4  Ocu-Mir-205-P4  Pab-Mir-205-P4  Pbv-Mir-205-P4  Rno-Mir-205-P4  Sha-Mir-205-P4  Spt-Mir-205-P4  Sto-Mir-205-P4  Tgu-Mir-205-P4  Tni-Mir-205-P4a  Xtr-Mir-205-P4 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(danRer11)		 chr23: 33290291-33290350 [+] UCSC Ensembl
Seed CCUUCAU
Precursor
(pre-Mir +30nt flank)		 
GUGGAUGGCCUAAAACUACUGUGCAUUCUAUCCUUCAUUCCACCGGAGUCUGUGUAGUUGUUCAAUCAGAUUUCAGUGGUGUGAAGUGUAGGAAACACGGAAAGAUCGCAUCCCUUUCUG
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Structure
        10          20        30        40        50         
GUGGAUGGCCUAAAACUA--|    CA     UC      U    C        UGUAGU 
                    CUGUG  UUCUA  CUUCAU CCAC GGAGUCUG      U
                    GGCAC  AGGAU  GAAGUG GGUG CUUUAGAC      G
GUCUUUCCCUACGCUAGAAA^    AA     GU      U    A        UAACUU 
.       110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Dicer cut +1 on the 5p arm.
3' NTU No
MotifsUGUG in loop
Tissue expression
- +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-205-P4a_5p
mirBase accessionMIMAT0001280
Sequence 
0- UCCUUCAUUCCACCGGAGUCUG -22
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Proposed targets TargetScanFish: dre-miR-205
Star sequence

Dre-Mir-205-P4a_3p*
mirBase accessionMIMAT0031925
Sequence 
38- GAUUUCAGUGGUGUGAAGUGUA -60
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