MirGeneDB ID | Mdo-Mir-205-P4 |
Family name |
MIR-205 (all species) |
Seed |
CCUUCAU |
Species |
Gray short-tailed opossum (Monodelphis domestica) |
MiRBase ID |
mdo-mir-205a
|
Paralogues |
|
Orthologues |
Aca-Mir-205-P4
Ami-Mir-205-P4
Bta-Mir-205-P4
Cfa-Mir-205-P4
Cli-Mir-205-P4
Cmi-Mir-205-P4
Cpi-Mir-205-P4
Cpo-Mir-205-P4
Dno-Mir-205-P4
Dre-Mir-205-P4a
Ete-Mir-205-P4
Gga-Mir-205-P4
Gja-Mir-205-P4
Gmo-Mir-205-P4a
Gmo-Mir-205-P4b
Hsa-Mir-205-P4
Lch-Mir-205-P4
Loc-Mir-205-P4
Loc-Mir-205-P4-as
Mal-Mir-205-P4a
Mal-Mir-205-P4b
Mml-Mir-205-P4
Mmu-Mir-205-P4
Mun-Mir-205-P4
Oan-Mir-205-P4
Ocu-Mir-205-P4
Pbv-Mir-205-P4
Rno-Mir-205-P4
Sha-Mir-205-P4
Spt-Mir-205-P4
Sto-Mir-205-P4
Tgu-Mir-205-P4
Tni-Mir-205-P4a
Xla-Mir-205-P4c
Xla-Mir-205-P4d
Xtr-Mir-205-P4
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (monDom5_add) |
2: 116544499-116544557 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GAGCUCAGGAUGAUCCAUGAAUUUCUCUUGUCCUUCAUUCCACCGGAGUCUGUCUCAUAUCUAAUCAGAUUUCAGUGGAGUGAAGCAUAAGAGGCAUGGAGUUGACUCAGCAUCAGCGG
Get precursor sequence
|
Structure | 10 20 30 40 50
GAGCUCAGGAUGAUCCAUGAAUU--| C C UCUCAU
UCUCUUGU CUUCAUUCCAC GGAGUCUG \
GGAGAAUA GAAGUGAGGUG CUUUAGAC A
GGCGACUACGACUCAGUUGAGGUAC^ C A UAAUCU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Mdo-Mir-205-P4_5p |
mirBase accession | MIMAT0012749 |
Sequence |
0- UCCUUCAUUCCACCGGAGUCUG -22
Get sequence
|
Proposed targets |
TargetScanVert: mdo-miR-205a
|
Star sequence |
Mdo-Mir-205-P4_3p* |
mirBase accession | None |
Sequence |
37- GAUUUCAGUGGAGUGAAGCAUA -59
Get sequence
|