MirGeneDB 2.1

MirGeneDB ID

Cmi-Mir-205-P4

Family name MIR-205 (all species)
Seed CCUUCAU
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-205-P1  Cmi-Mir-205-P2 
Orthologues Aca-Mir-205-P4  Ami-Mir-205-P4  Bta-Mir-205-P4  Cfa-Mir-205-P4  Cli-Mir-205-P4  Cpi-Mir-205-P4  Cpo-Mir-205-P4  Dno-Mir-205-P4  Dre-Mir-205-P4a  Ete-Mir-205-P4  Gga-Mir-205-P4  Gja-Mir-205-P4  Gmo-Mir-205-P4a  Gmo-Mir-205-P4b  Hsa-Mir-205-P4  Lch-Mir-205-P4  Loc-Mir-205-P4  Loc-Mir-205-P4-as  Mal-Mir-205-P4a  Mal-Mir-205-P4b  Mdo-Mir-205-P4  Mml-Mir-205-P4  Mmu-Mir-205-P4  Mun-Mir-205-P4  Oan-Mir-205-P4  Ocu-Mir-205-P4  Pbv-Mir-205-P4  Rno-Mir-205-P4  Sha-Mir-205-P4  Spt-Mir-205-P4  Sto-Mir-205-P4  Tgu-Mir-205-P4  Tni-Mir-205-P4a  Xla-Mir-205-P4c  Xla-Mir-205-P4d  Xtr-Mir-205-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)
KI635887.1: 6369998-6370057 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUGCACUGAUGACAUCCAUGCUUUCUGCUGUCCUUCAUUCCACCGGAGUCUGUGACAUAAACCAACCAGAUUUCAGUGGGGUGAAGCACAUGAGACAUGGAACAAACUCGUCCGUCCCCU
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Structure
        10             20        30        40        50         
AUGCACUGAUGACAUCC-----|  C    UGC   C           C        UGACAU 
                      AUG UUUC   UGU CUUCAUUCCAC GGAGUCUG      A
                      UAC AGAG   ACA GAAGUGGGGUG CUUUAGAC      A
UCCCCUGCCUGCUCAAACAAGG^  -    U--   C           A        CAACCA 
.       110       100           90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Bl Br Ey Gi Gl He In Ki Li Mu Ov Pa Sk Sp Te Ut
Mature sequence

Cmi-Mir-205-P4_5p

mirBase accessionNone
Sequence
0- UCCUUCAUUCCACCGGAGUCUG -22
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Star sequence

Cmi-Mir-205-P4_3p*

mirBase accessionNone
Sequence
38- GAUUUCAGUGGGGUGAAGCACA -60
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