Mir-205-P4a

MirGeneDB ID

Mal-Mir-205-P4a

Family name

MIR-205 (all species)

Seed

CCUUCAU

Species

Asian swamp eel (Monopterus albus)

MiRBase ID

Paralogues

Mal-Mir-205-P1-v1 Mal-Mir-205-P1-v2 Mal-Mir-205-P4b

Orthologues

Aca-Mir-205-P4 Ami-Mir-205-P4 Bta-Mir-205-P4 Cfa-Mir-205-P4 Cli-Mir-205-P4 Cmi-Mir-205-P4 Cpi-Mir-205-P4 Cpo-Mir-205-P4 Dno-Mir-205-P4 Dre-Mir-205-P4a Ete-Mir-205-P4 Gga-Mir-205-P4 Gja-Mir-205-P4 Gmo-Mir-205-P4a Hsa-Mir-205-P4 Lch-Mir-205-P4 Loc-Mir-205-P4 Loc-Mir-205-P4-as Mdo-Mir-205-P4 Mml-Mir-205-P4 Mmu-Mir-205-P4 Mun-Mir-205-P4 Oan-Mir-205-P4 Ocu-Mir-205-P4 Pbv-Mir-205-P4 Rno-Mir-205-P4 Sha-Mir-205-P4 Spt-Mir-205-P4 Sto-Mir-205-P4 Tgu-Mir-205-P4 Tni-Mir-205-P4a Xtr-Mir-205-P4

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(GCA_001952655.1_M_albus_1.0_genomic)

KV884882.1: 485056-485115 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

ACUUCCUACAAGAAUAUUCCAUGUAUUCUAUCCUUCAUUCCACCGGAGUCUGUAUCCGUACCUAACCAGAUUUCAGUGGUGUGAAGUGUAAGACGCAUGGGGAUACGACUUCAGCAGAUU

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Structure

        10          20        30        40        50         
ACUUCCUACAAGAAUAU--|     UA UC  UC      U    C        UAUCCG 
                   UCCAUG  U  UA  CUUCAU CCAC GGAGUCUG      U
                   GGGUAC  A  AU  GAAGUG GGUG CUUUAGAC      A
UUAGACGACUUCAGCAUAG^     GC GA  GU      U    A        CAAUCC 
.       110       100        90        80        70        60

Deep sequencing

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3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Fe	Fe	In	Ma	Ma

Mature sequence

Mal-Mir-205-P4a_5p

mirBase accession

None

Sequence

0- UCCUUCAUUCCACCGGAGUCUGU -23

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Star sequence

Mal-Mir-205-P4a_3p*

mirBase accession

None

Sequence

38- GAUUUCAGUGGUGUGAAGUGUA -60

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