MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-205-P4

Family name MIR-205 (all species)
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-205
Paralogues
Orthologues Aca-Mir-205-P4  Ami-Mir-205-P4  Bta-Mir-205-P4  Cfa-Mir-205-P4  Cja-Mir-205-P4  Cli-Mir-205-P4  Cmi-Mir-205-P4  Cpi-Mir-205-P4  Cpo-Mir-205-P4  Dno-Mir-205-P4  Dre-Mir-205-P4a  Eca-Mir-205-P4  Ete-Mir-205-P4  Gga-Mir-205-P4  Gja-Mir-205-P4  Gmo-Mir-205-P4a  Gmo-Mir-205-P4b  Hsa-Mir-205-P4  Laf-Mir-205-P4  Lch-Mir-205-P4  Loc-Mir-205-P4  Loc-Mir-205-P4-as  Mal-Mir-205-P4a  Mal-Mir-205-P4b  Mdo-Mir-205-P4  Mml-Mir-205-P4  Mmr-Mir-205-P4  Mmu-Mir-205-P4  Mun-Mir-205-P4  Neu-Mir-205-P4  Oan-Mir-205-P4  Ocu-Mir-205-P4  Pab-Mir-205-P4  Pbv-Mir-205-P4  Sha-Mir-205-P4  Spt-Mir-205-P4  Sto-Mir-205-P4  Tgu-Mir-205-P4  Tni-Mir-205-P4a  Xla-Mir-205-P4c  Xla-Mir-205-P4d  Xtr-Mir-205-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(rn6)		 chr13: 112233301-112233358 [-] UCSC Ensembl
Seed CCUUCAU
Precursor
(pre-Mir +30nt flank)		 
ACAGCCCCAGACAAUCCAUGGGUCCUCCUGUCCUUCAUUCCACCGGAGUCUGUCUUAUGCCAACCAGAUUUCAGUGGAGUGAAGCUCAGGAGGCAUGGAGCUGCCAGCGGUGGACUGA
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Structure
        10        20           30        40        50        
ACAGCCCCAGACAAUCCAUGG---|U       UC           C        UCUUA 
                        G CCUCCUG  CUUCAUUCCAC GGAGUCUG     U
                        C GGAGGAC  GAAGUGAGGUG CUUUAGAC     G
AGUCAGGUGGCGACCGUCGAGGUA^-       UC           A        CAACC 
      110       100         90        80        70        60
Deep sequencing
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CommentThere is a second Dicer cut +1 on the 5p arm.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Mature sequence

Rno-Mir-205-P4_5p
mirBase accessionMIMAT0000878
Sequence 
0- UCCUUCAUUCCACCGGAGUCUG -22
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Proposed targets microrna.org: MIMAT0000878
TargetScanVert: rno-miR-205
miRDB: MIMAT0000878
Star sequence

Rno-Mir-205-P4_3p*
mirBase accessionNone
Sequence 
36- GAUUUCAGUGGAGUGAAGCUCA -58
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