| MirGeneDB ID | Cmi-Mir-205-P1 |
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| Family name |
MIR-205 (all species) |
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| Species |
Australian ghostshark (Callorhinchus milii) |
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| MiRBase ID |
|
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| Paralogues |
Cmi-Mir-205-P2
Cmi-Mir-205-P4
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| Orthologues |
Lch-Mir-205-P1
Loc-Mir-205-P1
Mal-Mir-205-P1-v1
Pma-Mir-205-o1
Sto-Mir-205-P1
Xla-Mir-205-P1a
Xla-Mir-205-P1b
Xtr-Mir-205-P1
|
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| Node of Origin (locus) |
Gnathostomata
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| Node of Origin (family) |
Vertebrata
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Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3) |
KI635869.1: 4038642-4038703 [+]
UCSC
Ensembl
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| Seed |
CCUUCAU |
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Precursor
(pre-Mir +30nt flank) |
UGGCUUGAAGUGCAAUGGCACACUCUGGUGUCCUUCAUUCCACCGGGUCCUGUGUCCGAUUCUGAUCCAGAUUCCCAGUGAGAUGAAGCACAUGGGAGGUGUCAAUGAUCAACGAAAAUCAU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UGGCUUGAAGUGCAAUG---| A G C UC C UC- UGUCCGA
GCAC CUCU GUGU CUUCAU CAC GGG CUG \
UGUG GAGG UACA GAAGUA GUG CCC GAC U
UACUAAAAGCAACUAGUAAC^ - G C GA A UUA CUAGUCU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | There are Dicer cuts -1 and -2 on both arms. |
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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| Bl |
Br |
Ey |
Gi |
He |
In |
Ki |
Li |
Mu |
Ov |
Pa |
Re |
Sk |
Sp |
Te |
Ut |
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| Mature sequence |
Cmi-Mir-205-P1_5p |
| mirBase accession | None |
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| Sequence |
0- UCCUUCAUUCCACCGGGUCCUG -22
Get sequence
|
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| Star sequence |
Cmi-Mir-205-P1_3p* |
| mirBase accession | None |
|---|
| Sequence |
39- GAUUCCCAGUGAGAUGAAGCACA -62
Get sequence
|
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