| MirGeneDB ID | Xla-Mir-205-P1a |
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| Family name |
MIR-205 (all species) |
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| Seed |
UUCCCAG |
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| Species |
African clawed frog (Xenopus laevis) |
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| MiRBase ID |
|
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| Paralogues |
Xla-Mir-205-P1b
Xla-Mir-205-P4c
Xla-Mir-205-P4d
|
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| Orthologues |
Cmi-Mir-205-P1
Lch-Mir-205-P1
Loc-Mir-205-P1
Mal-Mir-205-P1-v1
Mal-Mir-205-P1-v2
Pma-Mir-205-o1
Sto-Mir-205-P1
Xtr-Mir-205-P1
|
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| Node of Origin (locus) |
X. laevis
|
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| Node of Origin (family) |
Vertebrata
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Genome context
(GCF_001663975.1_XLA_v2) |
NC_030730.1: 130668395-130668454 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AAGUUUCCUUCUAAAGGGCCCCUGCUGCUGUCCUUCAUUCCACUGGAUCCUGUGUAAAUAUAAUCCAGAUUCCCAGUGGCAUGAAGUGCAUUAGCUGAGCCUGUGAGCACCUACCAAGGG
Get precursor sequence
|
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| Structure | 10 20 30 40 50
AAGUUUCCUUCUAAAGG---| CCCU C UC U - UC GUGUAAA
GC GCUG UG CUUCAU CCACUGG A CU \
CG CGAU AC GAAGUA GGUGACC U GA U
GGGAACCAUCCACGAGUGUC^ AGU- U GU C C UA CCUAAUA
. 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | The 3' end of the 3p arm appears to be monouridylated. |
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
|
|
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| Star sequence |
Xla-Mir-205-P1a_5p* |
| mirBase accession | None |
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| Sequence |
0- UCCUUCAUUCCACUGGAUCCU -21
Get sequence
|
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| Mature sequence |
Xla-Mir-205-P1a_3p |
| mirBase accession | None |
|---|
| Sequence |
38- AUUCCCAGUGGCAUGAAGUGCA -60
Get sequence
|
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