MirGeneDB 3.0
MirGeneDB ID

Laf-Mir-124-P3

Family name MIR-124 (all species)
Species African bush elephant (Loxodonta africana)
MiRBase ID
Paralogues Laf-Mir-124-P1-v1  Laf-Mir-124-P2-v1  Laf-Mir-124-P3-v1 
Orthologues Aae-Mir-124  Aca-Mir-124-P3-v1  Aga-Mir-124  Agr-Mir-124  Ami-Mir-124-P3-v1  Asu-Mir-124  Bfl-Mir-124  Bge-Mir-124  Bko-Mir-124  Bla-Mir-124  Bpl-Mir-124  Bta-Mir-124-P3-v1  Cel-Mir-124  Cfa-Mir-124-P3-v1  Cja-Mir-124-P3-v1  Cli-Mir-124-P3-v1  Cmi-Mir-124-P3-v1  Cpi-Mir-124-P3-v1  Cpo-Mir-124-P3-v1  Cte-Mir-124  Dan-Mir-124  Dlo-Mir-124  Dma-Mir-124  Dme-Mir-124  Dmo-Mir-124  Dno-Mir-124-P3-v1  Dpu-Mir-124  Dre-Mir-124-P3a-v1  Dre-Mir-124-P3b-v1  Dsi-Mir-124  Dya-Mir-124  Eba-Mir-124  Eca-Mir-124-P3-v1  Esc-Mir-124  Gga-Mir-124-P3-v1  Gja-Mir-124-P3-v1  Gmo-Mir-124-P3a-v1  Gmo-Mir-124-P3b-v1  Gpa-Mir-124  Gsp-Mir-124  Hme-Mir-124  Hru-Mir-124  Hsa-Mir-124-P3-v1  Isc-Mir-124  Lan-Mir-124  Lch-Mir-124-P3  Lhy-Mir-124  Llo-Mir-124  Loc-Mir-124-P3-v1  Mal-Mir-124-P3a-v1  Mal-Mir-124-P3b-v1  Mdo-Mir-124-P3-v1  Mgi-Mir-124  Mml-Mir-124-P3-v1  Mmr-Mir-124-P3-v1  Mmu-Mir-124-P3-v1  Mom-Mir-124  Mun-Mir-124-P3-v1  Neu-Mir-124-P3-v1  Npo-Mir-124  Oan-Mir-124-P3-v1  Obi-Mir-124  Ocu-Mir-124-P3-v1  Ofu-Mir-124  Ovu-Mir-124  Pab-Mir-124-P3-v1  Pau-Mir-124  Pbv-Mir-124-P3-v1  Pdu-Mir-124  Pfl-Mir-124  Pma-Mir-124-o3  Pmi-Mir-124  Pve-Mir-124  Rno-Mir-124-P3-v1  Sha-Mir-124-P3-v1  Sko-Mir-124  Sma-Mir-124  Sne-Mir-124  Snu-Mir-124  Spt-Mir-124-P3e  Spt-Mir-124-P3f  Spu-Mir-124  Sro-Mir-124  Sto-Mir-124-P3-v1  Tca-Mir-124  Tgu-Mir-124-P3-v1  War-Mir-124  Xbo-Mir-124  Xla-Mir-124-P3c-v1  Xla-Mir-124-P3d-v1  Xtr-Mir-124-P3-v1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCA_000001905.1_Loxafr3.0)		 GL010148.1: 987728-987786 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-124-P3-v2)		 Mir-124-P2-v1 GL010148.1: 987727-987786 [-] UCSC Ensembl
Mir-124-P3-v1 GL010148.1: 987727-987786 [-] UCSC Ensembl
Mir-124-P2-v2 GL010148.1: 987728-987786 [-] UCSC Ensembl
Mir-124-P3-v2 GL010148.1: 987728-987786 [-] UCSC Ensembl
Variant

Laf-Mir-124-P3-v2
Seed UAAGGCA
Precursor
(pre-Mir +30nt flank)		 
CCGCCGGUCACAGCCCUGAGGGCCCCUCUGCGUGUUCACAGCGGACCUUGAUUUAAUGUCUAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAGGCGCCUCCGCCGCUCCUUUCUCAU
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Structure
        10        20          30        40        50         
CCGCCGGUCACAGCCCUG   -   C   -| C        A   GA        UAAUG 
                  AGG GCC CUC UG GUGUUCAC GCG  CCUUGAUU     U
                  UCC CGG GAG AC CGUAAGUG CGC  GGAAUUAA     C
UACUCUUUCCUCGCCGCC   G   A   A^ -        G   AC        CAUAU 
       110       100        90         80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Wh
Star sequence

Laf-Mir-124-P3-v2_5p* (predicted)
mirBase accessionNone
Sequence 
0- CGUGUUCACAGCGGACCUUGAUU -23
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Mature sequence

Laf-Mir-124-P3-v2_3p
mirBase accessionNone
Sequence 
37- UUAAGGCACGCGGUGAAUGCCA -59
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Variant

Laf-Mir-124-P3-v1
Seed AAGGCAC
Precursor
(pre-Mir +30nt flank)		 
CCGCCGGUCACAGCCCUGAGGGCCCCUCUGCGUGUUCACAGCGGACCUUGAUUUAAUGUCUAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAGGCGCCUCCGCCGCUCCUUUCUCAUG
Get precursor sequence
Structure
        10         20          30        40        50         
CCGCCGGUCACAGCCCU-    -   C   -| C        A   GA       UUAAUG 
                  GAGG GCC CUC UG GUGUUCAC GCG  CCUUGAU      U
                  CUCC CGG GAG AC CGUAAGUG CGC  GGAAUUA      C
GUACUCUUUCCUCGCCGC    G   A   A^ -        G   AC       ACAUAU 
.       110       100        90         80        70        60
Deep sequencing
Go to detailed chart
3' NTU NO
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Wh
Star sequence

Laf-Mir-124-P3-v1_5p* (predicted)
mirBase accessionNone
Sequence 
0- CGUGUUCACAGCGGACCUUGAU -22
Get sequence
Mature sequence

Laf-Mir-124-P3-v1_3p
mirBase accessionNone
Sequence 
38- UAAGGCACGCGGUGAAUGCCAA -60
Get sequence