MirGeneDB 2.1

MirGeneDB ID

Gja-Mir-1329-v1

Family name MIR-1329 (all species)
Seed ACAGUGA
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-1329-v2 
Orthologues Aca-Mir-1329-v1  Ami-Mir-1329  Bta-Mir-1329  Cli-Mir-1329-v1  Cmi-Mir-1329  Cpi-Mir-1329-v1  Ebu-Mir-1329  Gga-Mir-1329-v1  Mdo-Mir-1329  Mun-Mir-1329  Oan-Mir-1329-v1  Pbv-Mir-1329  Pma-Mir-1329  Sha-Mir-1329  Spt-Mir-1329  Sto-Mir-1329  Tgu-Mir-1329-v1  Xtr-Mir-1329 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCF_001447785.1_Gekko_japonicus)
NW_015163689.1: 181906-181966 [-]
Precursor
(pre-Mir +30nt flank)
UAGUUCUGAGUCUACAUCUGGUUGUAGGGGUACAGUGAUCAGGUUACGACGGAUUUCUGUAACAACCACCUCGUAGCUCGAUCACCAUCUCCCUGUGACCCAGAUAACGGCCGGUUUGAUG
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Structure
        10          20        30        40        50        60
UAGUUCUGAGUCUACAU-  -|  UG      UACA      AG       C  AUUUCUG 
                  CU GGU  UAGGGG    GUGAUC  GUUACGA GG       U
                  GA CCA  GUCCCU    CACUAG  CGAUGCU CC       A
GUAGUUUGGCCGGCAAUA  C^  GU      CUAC      CU       -  ACCAACA 
 .       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Gja-Mir-1329-v1_5p

mirBase accessionNone
Sequence
0- UACAGUGAUCAGGUUACGACGGA -23
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Star sequence

Gja-Mir-1329-v1_3p* (predicted)

mirBase accessionNone
Sequence
39- CUCGUAGCUCGAUCACCAUCUC -61
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