MirGeneDB 2.1

MirGeneDB ID

Gja-Mir-1329-v2

Family name MIR-1329 (all species)
Seed CAGUGAU
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-1329-v1 
Orthologues Aca-Mir-1329-v2  Ami-Mir-1329  Bta-Mir-1329  Cli-Mir-1329-v2  Cmi-Mir-1329  Cpi-Mir-1329-v2  Ebu-Mir-1329  Gga-Mir-1329-v2  Mdo-Mir-1329  Mun-Mir-1329  Oan-Mir-1329-v2  Pbv-Mir-1329  Pma-Mir-1329  Sha-Mir-1329  Spt-Mir-1329  Sto-Mir-1329  Tgu-Mir-1329-v2  Xtr-Mir-1329 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCF_001447785.1_Gekko_japonicus)
NW_015163689.1: 181907-181965 [-]
Precursor
(pre-Mir +30nt flank)
AGUUCUGAGUCUACAUCUGGUUGUAGGGGUACAGUGAUCAGGUUACGACGGAUUUCUGUAACAACCACCUCGUAGCUCGAUCACCAUCUCCCUGUGACCCAGAUAACGGCCGGUUUGAU
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Structure
        10          20        30        40        50         
AGUUCUGAGUCUACAUCU--|  UG      UACA      AG       C  AUUUCUG 
                    GGU  UAGGGG    GUGAUC  GUUACGA GG       U
                    CCA  GUCCCU    CACUAG  CGAUGCU CC       A
UAGUUUGGCCGGCAAUAGAC^  GU      CUAC      CU       -  ACCAACA 
       110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Gja-Mir-1329-v2_5p

mirBase accessionNone
Sequence
0- ACAGUGAUCAGGUUACGACGGAU -23
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Star sequence

Gja-Mir-1329-v2_3p* (predicted)

mirBase accessionNone
Sequence
37- CCUCGUAGCUCGAUCACCAUCU -59
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