MirGeneDB ID | Cmi-Mir-1329 |
Family name |
MIR-1329 (all species) |
Seed |
ACAGUGA |
Species |
Australian ghostshark (Callorhinchus milii) |
MiRBase ID |
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Paralogues |
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Orthologues |
Aca-Mir-1329-v1
Aca-Mir-1329-v2
Ami-Mir-1329
Bta-Mir-1329
Cli-Mir-1329-v1
Cli-Mir-1329-v2
Cpi-Mir-1329-v1
Cpi-Mir-1329-v2
Ebu-Mir-1329
Gga-Mir-1329-v1
Gga-Mir-1329-v2
Gja-Mir-1329-v1
Gja-Mir-1329-v2
Mdo-Mir-1329
Mun-Mir-1329
Oan-Mir-1329-v1
Oan-Mir-1329-v2
Pbv-Mir-1329
Pma-Mir-1329
Sha-Mir-1329
Spt-Mir-1329
Sto-Mir-1329
Tgu-Mir-1329-v1
Tgu-Mir-1329-v2
Xla-Mir-1329-P1
Xla-Mir-1329-P2
Xtr-Mir-1329
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCA_000165045.2_Callorhinchus_milii-6.1.3) |
KI635905.1: 4552076-4552135 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUUUUCACAGCAACAGUCUGGACAUAUGGAUACAGUGAUCAGGUUACGAUGGAUUGAAAAGUAAGAACCACAUAGCUUGGUCACGAUGUCCAUUUGACCAGAAAAUCUUCAACCUUCAGA
Get precursor sequence
|
Structure | 10 20 30 40 50
UUUUUCACAGCAACAGU--| A U CA CGA AUUGAAA
CUGG CA AUGGAUA GUGAUCAGGUUA UGG \
GACC GU UACCUGU CACUGGUUCGAU ACC A
AGACUUCCAACUUCUAAAA^ A U AG AC- AAGAAUG
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Yes
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Bl |
Br |
Ey |
Gi |
Gl |
He |
In |
Ki |
Li |
Mu |
Ov |
Pa |
Sk |
Sp |
Te |
Ut |
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Mature sequence |
Cmi-Mir-1329_5p |
mirBase accession | None |
Sequence |
0- UACAGUGAUCAGGUUACGAUGGA -23
Get sequence
|
Star sequence |
Cmi-Mir-1329_3p* |
mirBase accession | None |
Sequence |
38- CACAUAGCUUGGUCACGAUGUC -60
Get sequence
|