MirGeneDB 3.0
MirGeneDB ID

Gga-Mir-1329

Family name MIR-1329 (all species)
Species Chicken (Gallus gallus)
MiRBase ID gga-mir-1329
Paralogues
Orthologues Aca-Mir-1329-v1  Ami-Mir-1329  Bta-Mir-1329  Cli-Mir-1329-v1  Cmi-Mir-1329  Cpi-Mir-1329-v1  Ebu-Mir-1329  Eca-Mir-1329  Gja-Mir-1329-v1  Laf-Mir-1329  Mdo-Mir-1329  Mmr-Mir-1329  Mun-Mir-1329  Neu-Mir-1329  Oan-Mir-1329-v1  Pbv-Mir-1329  Pma-Mir-1329  Sha-Mir-1329  Spt-Mir-1329  Sto-Mir-1329  Tgu-Mir-1329-v1  Xtr-Mir-1329 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(Gallus_gallus.GRCg6a)		 3: 96917372-96917432 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-1329-v1)		 Mir-1329-v1 3: 96917372-96917432 [+] UCSC Ensembl
Mir-1329-v2 3: 96917373-96917431 [+] UCSC Ensembl
Variant

Gga-Mir-1329-v1
Seed ACAGUGA
Precursor
(pre-Mir +30nt flank)		 
UAGAAACAAGUCUUGGUCUGGUUGUAGAGAUACAGUGAUCACGUUACGAUGGAUUUCUCAAGUAACAACCUCGUAGCUUGAUCACGAUAUCCCUAUGACUUGAGAAACAGCAGGUUGAACU
Get precursor sequence
Structure
        10          20        30        40        50        60
UAGAAACAAGUCUUGGU--|U   UG   A    CA       C       U  AUUUCUC 
                   C GGU  UAG GAUA  GUGAUCA GUUACGA GG       A
                   G UCA  AUC CUAU  CACUAGU CGAUGCU CC       A
UCAAGUUGGACGACAAAGA^U   GU   C    AG       U       -  AACAAUG 
 .       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Ad Ad Br Br Ce Ce Ce Ce Gg He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Mature sequence

Gga-Mir-1329-v1_5p
mirBase accessionMIMAT0007281
Sequence 
0- UACAGUGAUCACGUUACGAUGGA -23
Get sequence
Proposed targets TargetScanVert: gga-miR-1329-5p
miRDB: MIMAT0007281
Star sequence

Gga-Mir-1329-v1_3p*
mirBase accessionMIMAT0007282
Sequence 
39- CUCGUAGCUUGAUCACGAUAUC -61
Get sequence
Proposed targets TargetScanVert: gga-miR-1329-3p
miRDB: MIMAT0007282
Variant

Gga-Mir-1329-v2
Seed CAGUGAU
Precursor
(pre-Mir +30nt flank)		 
AGAAACAAGUCUUGGUCUGGUUGUAGAGAUACAGUGAUCACGUUACGAUGGAUUUCUCAAGUAACAACCUCGUAGCUUGAUCACGAUAUCCCUAUGACUUGAGAAACAGCAGGUUGAAC
Get precursor sequence
Structure
        10          20        30        40        50         
AGAAACAAGUCUUGGUCU--|  UG   A    CA       C       U  AUUUCUC 
                    GGU  UAG GAUA  GUGAUCA GUUACGA GG       A
                    UCA  AUC CUAU  CACUAGU CGAUGCU CC       A
CAAGUUGGACGACAAAGAGU^  GU   C    AG       U       -  AACAAUG 
       110       100        90        80        70         60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Ad Ad Br Br Ce Ce Ce Ce Gg He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Mature sequence

Gga-Mir-1329-v2_5p
mirBase accessionMIMAT0007281
Sequence 
0- ACAGUGAUCACGUUACGAUGGAU -23
Get sequence
Proposed targets TargetScanVert: gga-miR-1329-5p
miRDB: MIMAT0007281
Star sequence

Gga-Mir-1329-v2_3p*
mirBase accessionMIMAT0007282
Sequence 
37- CCUCGUAGCUUGAUCACGAUAU -59
Get sequence
Proposed targets TargetScanVert: gga-miR-1329-3p
miRDB: MIMAT0007282