| MirGeneDB ID | Eca-Mir-1329 |
|---|
| Family name |
MIR-1329 (all species) |
|---|
| Species |
Horse (Equus caballus) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Aca-Mir-1329-v1
Ami-Mir-1329
Bta-Mir-1329
Cli-Mir-1329-v1
Cmi-Mir-1329
Cpi-Mir-1329-v1
Ebu-Mir-1329
Gga-Mir-1329-v1
Gja-Mir-1329-v1
Laf-Mir-1329
Mdo-Mir-1329
Mmr-Mir-1329
Mun-Mir-1329
Neu-Mir-1329
Oan-Mir-1329-v1
Pbv-Mir-1329
Pma-Mir-1329
Sha-Mir-1329
Spt-Mir-1329
Sto-Mir-1329
Tgu-Mir-1329-v1
Xla-Mir-1329-P1
Xla-Mir-1329-P2
Xtr-Mir-1329
|
|---|
| Node of Origin (locus) |
Vertebrata
|
|---|
| Node of Origin (family) |
Vertebrata
|
|---|
Genome context
(GCA_002863925.1_EquCab3.0) |
CM009162.1: 84059751-84059811 [-]
UCSC
Ensembl
|
|---|
| Seed |
ACAGUGA |
|---|
Precursor
(pre-Mir +30nt flank) |
GAAGGCAGAAUCUCAGUCUGGUUGUAGGGGUACAGUGAUCAGGUUAUGAUGGAUUUCUCAAAUAACAACCUCGUAGCUUGGUCACGAUAUCCAUAUGACACAGAUGGCAACUGUUUUACUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GAAGGCAGAAUCUCAGU- -| UG G CA U AUUUCUC
CUG GU UA GGGUA GUGAUCAGGUUAUGA GG A
GAC CA AU CCUAU CACUGGUUCGAUGCU CC A
CUCAUUUUGUCAACGGUA A^ GU A AG - AACAAUA
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Unknown
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
| Ps |
Bo |
Ca |
Em |
En |
En |
En |
En |
En |
En |
En |
Gl |
He |
He |
Ho |
Im |
Ki |
Li |
Lo |
Lu |
Ma |
Ma |
Mi |
Pl |
Sp |
Te |
Tr |
Ut |
Ut |
Yo |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Mature sequence |
Eca-Mir-1329_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UACAGUGAUCAGGUUAUGAUGGAU -24
Get sequence
|
|---|
| Star sequence |
Eca-Mir-1329_3p* |
| mirBase accession | None |
|---|
| Sequence |
38- CCUCGUAGCUUGGUCACGAUAUC -61
Get sequence
|
|---|
