MirGeneDB 3.0

MirGeneDB ID

Xtr-Mir-1329

Family name MIR-1329 (all species)
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID
Paralogues
Orthologues Aca-Mir-1329-v1  Ami-Mir-1329  Bta-Mir-1329  Cli-Mir-1329-v1  Cmi-Mir-1329  Cpi-Mir-1329-v1  Ebu-Mir-1329  Eca-Mir-1329  Gga-Mir-1329-v1  Gja-Mir-1329-v1  Laf-Mir-1329  Mdo-Mir-1329  Mmr-Mir-1329  Mun-Mir-1329  Neu-Mir-1329  Oan-Mir-1329-v1  Pbv-Mir-1329  Pma-Mir-1329  Sha-Mir-1329  Spt-Mir-1329  Sto-Mir-1329  Tgu-Mir-1329-v1  Xla-Mir-1329-P1  Xla-Mir-1329-P2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(xenTro9_add)
chr5: 134486378-134486438 [+] UCSC Ensembl
Seed ACAGUGA
Precursor
(pre-Mir +30nt flank)
UUUCGAGACCUAUCAAUCUAGUUGUAGGGGUACAGUGAUCAGGUUACGAUGGAUUUCUGAAGUAACGGCCUCGUAACUUGGUCACCAUAUCCAUAUGACUCAGAUAACUACGCUGUUCUGU
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Structure
        10          20        30        40        50        60
UUUCGAGACCUAUCAAU-  -|  UG  G     CA               U  AUUUCUG 
                  CU AGU  UA GGGUA  GUGAUCAGGUUACGA GG       A
                  GA UCA  AU CCUAU  CACUGGUUCAAUGCU CC       A
UGUCUUGUCGCAUCAAUA  C^  GU  A     AC               -  GGCAAUG 
 .       110       100        90        80         70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
- +
An Br Em Em He Ve
Mature sequence

Xtr-Mir-1329_5p

mirBase accessionNone
Sequence
0- UACAGUGAUCAGGUUACGAUGGA -23
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Star sequence

Xtr-Mir-1329_3p* (predicted)

mirBase accessionNone
Sequence
39- CUCGUAACUUGGUCACCAUAUC -61
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