| MirGeneDB ID | Sha-Mir-1329 |
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| Family name |
MIR-1329 (all species) |
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| Species |
Tasmanian devil (Sarcophilus harrisii) |
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| MiRBase ID |
sha-mir-1329
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| Paralogues |
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| Orthologues |
Aca-Mir-1329-v1
Ami-Mir-1329
Bta-Mir-1329
Cli-Mir-1329-v1
Cmi-Mir-1329
Cpi-Mir-1329-v1
Ebu-Mir-1329
Eca-Mir-1329
Gga-Mir-1329-v1
Gja-Mir-1329-v1
Laf-Mir-1329
Mdo-Mir-1329
Mmr-Mir-1329
Mun-Mir-1329
Neu-Mir-1329
Oan-Mir-1329-v1
Pbv-Mir-1329
Pma-Mir-1329
Spt-Mir-1329
Sto-Mir-1329
Tgu-Mir-1329-v1
Xla-Mir-1329-P1
Xla-Mir-1329-P2
Xtr-Mir-1329
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| Node of Origin (locus) |
Vertebrata
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| Node of Origin (family) |
Vertebrata
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Genome context
(DEVIL_add) |
GL834685.1: 638198-638259 [-]
UCSC
Ensembl
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| Seed |
ACAGUGA |
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Precursor
(pre-Mir +30nt flank) |
GAGGGAGGAAUCUUGGUCUGGUUGUAGGGGUACAGUGAUCGGGUUAUGAUGGAUUUUCUCAAGUAAUCACCUCAUAACUCAGUCACGAUAUCCAUAUGACUCAGAUGGCUGCAGUUUUAGAC
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
GAGGGAGGAAUCUUGGU- -| UG G CA C U AUUUUCUC
CUG GU UA GGGUA GUGAU GGGUUAUGA GG \
GAC CA AU CCUAU CACUG CUCAAUACU CC A
CAGAUUUUGACGUCGGUA U^ GU A AG A - ACUAAUGA
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | There is a second Dicer cut +2 on the 3p arm. |
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
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| Mature sequence |
Sha-Mir-1329_5p |
| mirBase accession | None |
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| Sequence |
0- UACAGUGAUCGGGUUAUGAUGGA -23
Get sequence
|
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| Star sequence |
Sha-Mir-1329_3p* |
| mirBase accession | MIMAT0022773 |
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| Sequence |
40- CUCAUAACUCAGUCACGAUAUC -62
Get sequence
|
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