| MirGeneDB ID | Xla-Mir-1329-P1 |
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| Family name |
MIR-1329 (all species) |
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| Species |
African clawed frog (Xenopus laevis) |
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| MiRBase ID |
|
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| Paralogues |
Xla-Mir-1329-P2
|
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| Orthologues |
Ami-Mir-1329
Bta-Mir-1329
Cmi-Mir-1329
Ebu-Mir-1329
Eca-Mir-1329
Laf-Mir-1329
Mdo-Mir-1329
Mmr-Mir-1329
Mun-Mir-1329
Neu-Mir-1329
Pbv-Mir-1329
Pma-Mir-1329
Sha-Mir-1329
Spt-Mir-1329
Sto-Mir-1329
Xtr-Mir-1329
|
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| Node of Origin (locus) |
X. laevis
|
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| Node of Origin (family) |
Vertebrata
|
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Genome context
(GCF_001663975.1_XLA_v2) |
NC_030732.1: 138447370-138447430 [+]
UCSC
Ensembl
|
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| Seed |
ACAGUGA |
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Precursor
(pre-Mir +30nt flank) |
UUUCGAGACCUGUCAAUCUAGUUGUAGGGGUACAGUGAUCAGGUUACGAUGGAUUUCUGAAGUAACAGCCUCGUAGCUUGGUCACCAUAUCCAUAUGACUUAGAUAACAACGCUGUUCUGU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UUUCGAGACCUGUCAAU- -| UG G CA U AUUUCUG
CU AGU UA GGGUA GUGAUCAGGUUACGA GG A
GA UCA AU CCUAU CACUGGUUCGAUGCU CC A
UGUCUUGUCGCAACAAUA U^ GU A AC - GACAAUG
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Unknown
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Xla-Mir-1329-P1_5p |
| mirBase accession | None |
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| Sequence |
0- UACAGUGAUCAGGUUACGAUGGA -23
Get sequence
|
|---|
| Star sequence |
Xla-Mir-1329-P1_3p* |
| mirBase accession | None |
|---|
| Sequence |
39- CUCGUAGCUUGGUCACCAUAUC -61
Get sequence
|
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