MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-1329

Family name MIR-1329 (all species)
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-1329
Paralogues
Orthologues Aca-Mir-1329-v1  Ami-Mir-1329  Bta-Mir-1329  Cli-Mir-1329-v1  Cmi-Mir-1329  Cpi-Mir-1329-v1  Ebu-Mir-1329  Eca-Mir-1329  Gga-Mir-1329-v1  Gja-Mir-1329-v1  Laf-Mir-1329  Mdo-Mir-1329  Mmr-Mir-1329  Mun-Mir-1329  Neu-Mir-1329  Oan-Mir-1329-v1  Pbv-Mir-1329  Sha-Mir-1329  Spt-Mir-1329  Sto-Mir-1329  Tgu-Mir-1329-v1  Xla-Mir-1329-P1  Xla-Mir-1329-P2  Xtr-Mir-1329 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046095.1: 6741701-6741764 [+] UCSC Ensembl
Seed ACAGUGA
Precursor
(pre-Mir +30nt flank)		 
GCCGACUCACACAUAUCUGCGUGGCGCAGCUACAGUGACCAGGUUAUGACGGAGUCAUAUCUCGAUUCGCCCAUCGUGGUCUGGUCACCCUGCCUGCCCACGUGGACAAGCAUCACCGGCCCUG
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Structure
        10           20        30        40        50        60 
GCCGACUCACACAUAUCU---|     C    C  CA        GU     C  AGUCAUAU 
                     GCGUGG GCAG UA  GUGACCAG  UAUGA GG        C
                     UGCACC CGUC GU  CACUGGUC  GUGCU CC        U
GUCCCGGCCACUACGAACAGG^     -    C  CC        UG     A  CGCUUAGC 
  120       110       100         90        80        70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Mir-1329_5p
mirBase accessionMIMAT0019560
Sequence 
0- UACAGUGACCAGGUUAUGACGGA -23
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Star sequence

Pma-Mir-1329_3p* (predicted)
mirBase accessionNone
Sequence 
42- AUCGUGGUCUGGUCACCCUGCC -64
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