MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-29-P2b

Family name MIR-29 (all species)
Species Horse (Equus caballus)
MiRBase ID eca-mir-29a
Paralogues Eca-Mir-29-P1b-v1  Eca-Mir-29-P1d-v1  Eca-Mir-29-P2b-v1  Eca-Mir-29-P2d7  Eca-Mir-29-P2d8 
Orthologues Aca-Mir-29-P2b  Agr-Mir-29-P2  Ami-Mir-29-P2b  Asu-Mir-29-P2  Bfl-Mir-29-P2  Bla-Mir-29-P2  Bta-Mir-29-P2b  Cbr-Mir-29-P2  Cel-Mir-29-P2  Cfa-Mir-29-P2b  Cja-Mir-29-P2b  Cli-Mir-29-P2b  Cmi-Mir-29-P2b  Cpi-Mir-29-P2b  Cpo-Mir-29-P2b  Cte-Mir-29-P2  Dgr-Mir-29-P2  Dma-Mir-29-P2  Dno-Mir-29-P2b  Dpu-Mir-29-P2  Dre-Mir-29-P2b1  Eba-Mir-29-P2  Esc-Mir-29-P2  Ete-Mir-29-P2b  Gga-Mir-29-P2b  Gja-Mir-29-P2b  Gmo-Mir-29-P2b1  Gsp-Mir-29  Hru-Mir-29-P2  Hsa-Mir-29-P2b  Laf-Mir-29-P2b  Lch-Mir-29-P2b  Lgi-Mir-29-P2  Lhy-Mir-29-P2  Llo-Mir-29-P2  Loc-Mir-29-P2b  Mal-Mir-29-P2b1-v1  Mdo-Mir-29-P2b  Mgi-Mir-29-P2  Mml-Mir-29-P2b  Mmr-Mir-29-P2b-v1  Mmu-Mir-29-P2b  Mom-Mir-29-P2  Mun-Mir-29-P2b  Neu-Mir-29-P2b  Npo-Mir-29-P2  Oan-Mir-29-P2b  Obi-Mir-29-P2  Ocu-Mir-29-P2b  Ofu-Mir-29-P2  Ovu-Mir-29-P2  Pab-Mir-29-P2b  Pau-Mir-29-P2  Pbv-Mir-29-P2b  Pcr-Mir-29-P2  Pdu-Mir-29-P2  Pfl-Mir-29-P2  Pmi-Mir-29-P2  Pve-Mir-29-P2  Rno-Mir-29-P2b  Rph-Mir-29-P2  Sha-Mir-29-P2b  Sko-Mir-29-P2  Sme-Mir-29-o2  Spt-Mir-29-P2b  Spu-Mir-29-P2  Sto-Mir-29-P2b  Tgu-Mir-29-P2b  Tni-Mir-29-P2b1  War-Mir-29-P2  Xbo-Mir-29-P2  Xla-Mir-29-P2b3  Xla-Mir-29-P2b4  Xtr-Mir-29-P2b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009151.1: 85442663-85442722 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-29-P2b-v2)		 Mir-29-P2b-v1 CM009151.1: 85442663-85442722 [-] UCSC Ensembl
Mir-29-P2b-v2 CM009151.1: 85442663-85442722 [-] UCSC Ensembl
Mir-29-P1b-v1 CM009151.1: 85443049-85443112 [-] UCSC Ensembl
Mir-29-P1b-v2 CM009151.1: 85443050-85443111 [-] UCSC Ensembl
Variant

Eca-Mir-29-P2b-v2
Seed UAGCACC
Precursor
(pre-Mir +30nt flank)		 
ACAAGUCCUCCUGUGACCCCUUAGAGGAUGACUGAUUUCUUUUGGUGUUCAGAGUCAAUAUAAUUUUCUAGCACCAUCUGAAAUCGGUUAUAAUGAUGGGGGAAGAGCACCGUGCAGCCG
Get precursor sequence
Structure
        10         20         30        40        50          
ACAAGUCCUCCUGUGAC-      GAGG-|           UUU       C    UCAAU 
                  CCCUUA     AUGACUGAUUUC   UGGUGUU AGAG     \
                  GGGGGU     UAUUGGCUAAAG   ACCACGA UCUU     A
GCCGACGUGCCACGAGAA      AGUAA^           UCU       -    UUAAU 
.       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Star sequence

Eca-Mir-29-P2b-v2_5p*
mirBase accessionNone
Sequence 
0- ACUGAUUUCUUUUGGUGUUCAGAG -24
Get sequence
Mature sequence

Eca-Mir-29-P2b-v2_3p
mirBase accessionMIMAT0012940
Sequence 
37- CUAGCACCAUCUGAAAUCGGUUA -60
Get sequence
Variant

Eca-Mir-29-P2b-v1
Seed AGCACCA
Precursor
(pre-Mir +30nt flank)		 
ACAAGUCCUCCUGUGACCCCUUAGAGGAUGACUGAUUUCUUUUGGUGUUCAGAGUCAAUAUAAUUUUCUAGCACCAUCUGAAAUCGGUUAUAAUGAUGGGGGAAGAGCACCGUGCAGCCG
Get precursor sequence
Structure
        10         20         30        40        50          
ACAAGUCCUCCUGUGAC-      GAGG-|           UUU       C   GUCAAU 
                  CCCUUA     AUGACUGAUUUC   UGGUGUU AGA      \
                  GGGGGU     UAUUGGCUAAAG   ACCACGA UCU      A
GCCGACGUGCCACGAGAA      AGUAA^           UCU       -   UUUAAU 
.       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Star sequence

Eca-Mir-29-P2b-v1_5p*
mirBase accessionNone
Sequence 
0- ACUGAUUUCUUUUGGUGUUCAGA -23
Get sequence
Mature sequence

Eca-Mir-29-P2b-v1_3p
mirBase accessionMIMAT0012940
Sequence 
38- UAGCACCAUCUGAAAUCGGUUA -60
Get sequence