MirGeneDB ID | Dre-Mir-456 |
Family name |
MIR-456 (all species) |
Seed |
AGGCUGG |
Species |
Zebrafish (Danio rerio) |
MiRBase ID |
dre-mir-456
|
Paralogues |
|
Orthologues |
Aca-Mir-456
Ami-Mir-456
Cli-Mir-456
Cmi-Mir-456
Cpi-Mir-456
Ebu-Mir-456
Gga-Mir-456
Gja-Mir-456
Gmo-Mir-456
Lch-Mir-456
Loc-Mir-456
Mal-Mir-456
Mun-Mir-456
Pbv-Mir-456
Pma-Mir-456
Sto-Mir-456
Tgu-Mir-456
Xla-Mir-456-P1
Xla-Mir-456-P2
Xtr-Mir-456
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Vertebrata
|
Genome context (danRer11) |
chr17: 22827076-22827137 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GUUGCUGAUUUCCGCUGGCUGGUUGUGUGUGCAGGCAUCUUUCCAGUCUACAUGUGGAUCCAGGAGUCUGCAGGCUGGUUAGAUGGUUGUCACGUACCCAGCAAACAUCACAGUGUUUUAUU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GUUGCUGAUUUCCGCUG---| U U G UU A UGUGGAU
GCUGG UGUGUG GCAG CAUCU CCAGUCU CA C
CGACC AUGCAC UGUU GUAGA GGUCGGA GU C
UUAUUUUGUGACACUACAAA^ C - G UU C CUGAGGA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UGUG in loop |
Tissue expression
|
Br |
Br |
Em |
Ey |
Gu |
Gu |
He |
Li |
Li |
Ov |
Te |
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Star sequence |
Dre-Mir-456_5p* |
mirBase accession | None |
Sequence |
0- GCAGGCAUCUUUCCAGUCUACA -22
Get sequence
|
Mature sequence |
Dre-Mir-456_3p |
mirBase accession | MIMAT0001882 |
Sequence |
40- CAGGCUGGUUAGAUGGUUGUCA -62
Get sequence
|
Proposed targets |
TargetScanFish: dre-miR-456
|