MirGeneDB ID | Tgu-Mir-456 |
Family name |
MIR-456 (all species) |
Species |
Zebra finch (Taeniopygia guttata) |
MiRBase ID |
tgu-mir-456
|
Paralogues |
|
Orthologues |
Aca-Mir-456
Ami-Mir-456
Cli-Mir-456
Cmi-Mir-456
Cpi-Mir-456
Dre-Mir-456
Ebu-Mir-456
Gga-Mir-456
Gja-Mir-456
Gmo-Mir-456
Lch-Mir-456
Loc-Mir-456
Mal-Mir-456
Mun-Mir-456
Pbv-Mir-456
Pma-Mir-456
Sto-Mir-456
Xla-Mir-456-P1
Xla-Mir-456-P2
Xtr-Mir-456
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Vertebrata
|
Genome context (TaeGut1_add) |
3: 79764295-79764355 [+]
UCSC
Ensembl
|
Seed |
AGGCUGG |
Precursor (pre-Mir +30nt flank) |
GCUCUGUGUGUGUGUGUGUGGUGUGUGUGAGCAGGCAUCUUCUCAGCCUACAUGUGGAUUCCUAAAUCUGCAGGCUGGUUAGAUGGUUGUCAUGGCAUUCAUCUGAUAUCUACUGAAAUUC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GCUCUGUGUGUGUGUGUGU U GA--| G UC A UGUGGAU
GGUG GUGU GCAG CAUCU UCAGCCU CA U
CUAC UACG UGUU GUAGA GGUCGGA GU C
CUUAAAGUCAUCUAUAGU- U GUAC^ G UU C CUAAAUC
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Yes
|
Motifs | UG at 5p(-14), UGUG in loop |
Tissue expression
|
|
Star sequence |
Tgu-Mir-456_5p* |
mirBase accession | MIMAT0026964 |
Sequence |
0- GCAGGCAUCUUCUCAGCCUACA -22
Get sequence
|
Mature sequence |
Tgu-Mir-456_3p |
mirBase accession | MIMAT0014469 |
Sequence |
40- CAGGCUGGUUAGAUGGUUGUC -61
Get sequence
|