MirGeneDB ID | Cmi-Mir-456 |
Family name |
MIR-456 (all species) |
Seed |
AGGCUGG |
Species |
Australian ghostshark (Callorhinchus milii) |
MiRBase ID |
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Paralogues |
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Orthologues |
Aca-Mir-456
Ami-Mir-456
Cli-Mir-456
Cpi-Mir-456
Dre-Mir-456
Ebu-Mir-456
Gga-Mir-456
Gja-Mir-456
Gmo-Mir-456
Lch-Mir-456
Loc-Mir-456
Mal-Mir-456
Mun-Mir-456
Pbv-Mir-456
Pma-Mir-456
Sto-Mir-456
Tgu-Mir-456
Xla-Mir-456-P1
Xla-Mir-456-P2
Xtr-Mir-456
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Vertebrata
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Genome context (GCA_000165045.2_Callorhinchus_milii-6.1.3) |
KI635916.1: 3552896-3552956 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UGUUGCGCUUUGAAGCCACUGUGUGUGAGAGCAGGUAUCUUCCCAGCCUACACGUAGGUCCUGAAAUCUGCAGGCUGGUUUGAUGGUUGUCUUGCACACAGCAAGUGUGAAAUGUAAAUGC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UGUUGCGCUUUGAAGCCA--| UG G G UUC A CGUAGGU
CUGUGUG AGA CAG UAUC CCAGCCU CA C
GACACAC UCU GUU GUAG GGUCGGA GU C
CGUAAAUGUAAAGUGUGAAC^ GU - G UUU C CUAAAGU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | Based on structural and phylogenetic considerations it is assumed that the templated 3' U is a post-transcriptional addition. |
3' NTU |
Yes
|
Motifs | No |
Tissue expression
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Bl |
Br |
Ey |
Gi |
Gl |
He |
In |
Ki |
Li |
Mu |
Ov |
Pa |
Sk |
Sp |
Te |
Ut |
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Star sequence |
Cmi-Mir-456_5p* |
mirBase accession | None |
Sequence |
0- GCAGGUAUCUUCCCAGCCUACA -22
Get sequence
|
Mature sequence |
Cmi-Mir-456_3p |
mirBase accession | None |
Sequence |
40- CAGGCUGGUUUGAUGGUUGUC -61
Get sequence
|