MirGeneDB ID | Lch-Mir-456 |
---|---|
Family name | MIR-456 (all species) |
Seed | AGGCUGG |
Species | Coelacanth (Latimeria chalumnae) |
MiRBase ID | |
Paralogues | |
Orthologues | Aca-Mir-456 Ami-Mir-456 Cli-Mir-456 Cmi-Mir-456 Cpi-Mir-456 Dre-Mir-456 Ebu-Mir-456 Gga-Mir-456 Gja-Mir-456 Gmo-Mir-456 Loc-Mir-456 Mal-Mir-456 Mun-Mir-456 Pbv-Mir-456 Pma-Mir-456 Sto-Mir-456 Tgu-Mir-456 Xla-Mir-456-P1 Xla-Mir-456-P2 Xtr-Mir-456 |
Node of Origin (locus) | Vertebrata |
Node of Origin (family) | Vertebrata |
Genome context (LatCha1_add) |
JH126700.1: 1144993-1145053 [-] Ensembl |
Precursor (pre-Mir +30nt flank) | GGGACAUUCUUGAUAUUGCUGUGUGUGUGUGCAGGCAUCUUCCCAGCCUACAUGUGGAUUCCUAAAUCUGCAGGCUGGUUAGAUGGUUGUCGUACAUUCAGUUCAUCUCCAUGGAUCUGGCGet precursor sequence |
Structure | 10 20 30 40 50 60 GGGACAUUCUUGAUAUU--| U U G UC A UGUGGAU GCUG GUGUGUG GCAG CAUCU CCAGCCU CA U UGAC UACAUGC UGUU GUAGA GGUCGGA GU C CGGUCUAGGUACCUCUACU^ U - G UU C CUAAAUC . 110 100 90 80 70 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
Star sequence | Lch-Mir-456_5p* (predicted) |
mirBase accession | None |
Sequence |
0- GCAGGCAUCUUCCCAGCCUACA -22
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|
Mature sequence | Lch-Mir-456_3p (predicted) |
mirBase accession | None |
Sequence |
40- CAGGCUGGUUAGAUGGUUGUC -61
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|