MirGeneDB 2.1

MirGeneDB ID

Lch-Mir-456

Family name MIR-456 (all species)
Seed AGGCUGG
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues
Orthologues Aca-Mir-456  Ami-Mir-456  Cli-Mir-456  Cmi-Mir-456  Cpi-Mir-456  Dre-Mir-456  Ebu-Mir-456  Gga-Mir-456  Gja-Mir-456  Gmo-Mir-456  Loc-Mir-456  Mal-Mir-456  Mun-Mir-456  Pbv-Mir-456  Pma-Mir-456  Sto-Mir-456  Tgu-Mir-456  Xla-Mir-456-P1  Xla-Mir-456-P2  Xtr-Mir-456 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(LatCha1_add)
JH126700.1: 1144993-1145053 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GGGACAUUCUUGAUAUUGCUGUGUGUGUGUGCAGGCAUCUUCCCAGCCUACAUGUGGAUUCCUAAAUCUGCAGGCUGGUUAGAUGGUUGUCGUACAUUCAGUUCAUCUCCAUGGAUCUGGC
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Structure
        10          20        30        40        50        60
GGGACAUUCUUGAUAUU--|   U       U    G     UC       A  UGUGGAU 
                   GCUG GUGUGUG GCAG CAUCU  CCAGCCU CA       U
                   UGAC UACAUGC UGUU GUAGA  GGUCGGA GU       C
CGGUCUAGGUACCUCUACU^   U       -    G     UU       C  CUAAAUC 
 .       110       100         90        80        70
Deep sequencing
3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Star sequence

Lch-Mir-456_5p* (predicted)

mirBase accessionNone
Sequence
0- GCAGGCAUCUUCCCAGCCUACA -22
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Mature sequence

Lch-Mir-456_3p (predicted)

mirBase accessionNone
Sequence
40- CAGGCUGGUUAGAUGGUUGUC -61
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