MirGeneDB 2.1

MirGeneDB ID

Ami-Mir-456

Family name MIR-456 (all species)
Seed AGGCUGG
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-456
Paralogues
Orthologues Aca-Mir-456  Cli-Mir-456  Cmi-Mir-456  Cpi-Mir-456  Dre-Mir-456  Ebu-Mir-456  Gga-Mir-456  Gja-Mir-456  Gmo-Mir-456  Lch-Mir-456  Loc-Mir-456  Mal-Mir-456  Mun-Mir-456  Pbv-Mir-456  Pma-Mir-456  Sto-Mir-456  Tgu-Mir-456  Xla-Mir-456-P1  Xla-Mir-456-P2  Xtr-Mir-456 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)
NW_017713578.1: 11020031-11020091 [+] UCSC
Precursor
(pre-Mir +30nt flank)
GUAUUAAAACUGCUGUGUGUGUAUGUGUGAGCAGGCAUCUUCUCAGCCUACAUGUGGAUUCUUAAAUCUGCAGGCUGGUUAGAUGGUUGUCAUACAUUCACCUGAAAUCUGCUGAAAAUUA
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Structure
        10          20        30        40        50        60
GUAUUAAAACUGCUGUGU--|  U        G   G     UC       A AUGUGGAU 
                    GUG AUGUGUGA CAG CAUCU  UCAGCCU C        U
                    CAC UACAUACU GUU GUAGA  GGUCGGA G        C
AUUAAAAGUCGUCUAAAGUC^  U        -   G     UU       C UCUAAAUU 
 .       110       100        90         80        70
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Ami-Mir-456_5p* (predicted)

mirBase accessionNone
Sequence
0- GCAGGCAUCUUCUCAGCCUAC -21
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Mature sequence

Ami-Mir-456_3p

mirBase accessionMIMAT0038289
Sequence
40- CAGGCUGGUUAGAUGGUUGUC -61
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