MirGeneDB ID | Xla-Mir-456-P1 |
Family name |
MIR-456 (all species) |
Seed |
AGGCUGG |
Species |
African clawed frog (Xenopus laevis) |
MiRBase ID |
|
Paralogues |
Xla-Mir-456-P2
|
Orthologues |
Aca-Mir-456
Ami-Mir-456
Cli-Mir-456
Cmi-Mir-456
Cpi-Mir-456
Dre-Mir-456
Ebu-Mir-456
Gga-Mir-456
Gja-Mir-456
Gmo-Mir-456
Lch-Mir-456
Loc-Mir-456
Mal-Mir-456
Mun-Mir-456
Pbv-Mir-456
Pma-Mir-456
Sto-Mir-456
Tgu-Mir-456
Xtr-Mir-456
|
Node of Origin (locus) |
X. laevis
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCF_001663975.1_XLA_v2) |
NC_030732.1: 45643356-45643416 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GGCUACCAUUUAAGCUUUGUGGGUGUGUGAGCAGGCAUCUUCUCAGCCUACAUGUAGAUUGCCAAAUCUGCAGGCUGGUUAGAUGGUUGUCAUACAUUCACUUUAUAUCUGCAAAAAAGUU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GGCUACCAUUUAAGCUUU--| G G UC A UGUAGAU
GUGGGUGUGUGA CAG CAUCU UCAGCCU CA U
CACUUACAUACU GUU GUAGA GGUCGGA GU G
UUGAAAAAACGUCUAUAUUU^ - G UU C CUAAACC
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Yes
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Star sequence |
Xla-Mir-456-P1_5p* |
mirBase accession | None |
Sequence |
0- GCAGGCAUCUUCUCAGCCUACA -22
Get sequence
|
Mature sequence |
Xla-Mir-456-P1_3p |
mirBase accession | None |
Sequence |
40- CAGGCUGGUUAGAUGGUUGUC -61
Get sequence
|