MirGeneDB 2.1

MirGeneDB ID

Dre-Mir-199-P1a-v2

Family name MIR-199 (all species)
Seed ACAGUAG
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-199-1
Paralogues Dre-Mir-199-P1a-v1  Dre-Mir-199-P1a-v3  Dre-Mir-199-P2a-v1  Dre-Mir-199-P2a-v2  Dre-Mir-199-P2a-v3  Dre-Mir-199-P2b-v1  Dre-Mir-199-P2b-v2  Dre-Mir-199-P2b-v3  Dre-Mir-199-P3-v1  Dre-Mir-199-P3-v2  Dre-Mir-199-P3-v3 
Orthologues Aca-Mir-199-P1-v1  Aca-Mir-199-P1-v2  Aca-Mir-199-P1-v3  Ami-Mir-199-P1-v1  Ami-Mir-199-P1-v2  Ami-Mir-199-P1-v3  Bta-Mir-199-P1-v1  Bta-Mir-199-P1-v2  Bta-Mir-199-P1-v3  Cfa-Mir-199-P1-v1  Cfa-Mir-199-P1-v2  Cfa-Mir-199-P1-v3  Cli-Mir-199-P1-v1  Cli-Mir-199-P1-v2  Cli-Mir-199-P1-v3  Cmi-Mir-199-P1-v1  Cmi-Mir-199-P1-v2  Cmi-Mir-199-P1-v3  Cpi-Mir-199-P1-v1  Cpi-Mir-199-P1-v2  Cpi-Mir-199-P1-v3  Cpo-Mir-199-P1-v1  Cpo-Mir-199-P1-v2  Cpo-Mir-199-P1-v3  Dno-Mir-199-P1-v1  Dno-Mir-199-P1-v2  Dno-Mir-199-P1-v3  Ete-Mir-199-P1-v1  Ete-Mir-199-P1-v2  Ete-Mir-199-P1-v3  Gga-Mir-199-P1-v1  Gga-Mir-199-P1-v2  Gga-Mir-199-P1-v3  Gja-Mir-199-P1-v1  Gja-Mir-199-P1-v2  Gja-Mir-199-P1-v3  Gmo-Mir-199-P1a-v1  Gmo-Mir-199-P1a-v2  Gmo-Mir-199-P1a-v3  Hsa-Mir-199-P1-v1  Hsa-Mir-199-P1-v2  Hsa-Mir-199-P1-v3  Lch-Mir-199-P1  Loc-Mir-199-P1-v1  Loc-Mir-199-P1-v2  Mal-Mir-199-P1a-v1  Mal-Mir-199-P1a-v2  Mal-Mir-199-P1a-v3  Mdo-Mir-199-P1-v1  Mdo-Mir-199-P1-v2  Mdo-Mir-199-P1-v3  Mml-Mir-199-P1-v1  Mml-Mir-199-P1-v2  Mml-Mir-199-P1-v3  Mmu-Mir-199-P1-v1  Mmu-Mir-199-P1-v2  Mmu-Mir-199-P1-v3  Mun-Mir-199-P1-v1  Mun-Mir-199-P1-v2  Mun-Mir-199-P1-v3  Oan-Mir-199-P1-v1  Oan-Mir-199-P1-v2  Oan-Mir-199-P1-v3  Ocu-Mir-199-P1-v1  Ocu-Mir-199-P1-v2  Ocu-Mir-199-P1-v3  Pbv-Mir-199-P1-v1  Pbv-Mir-199-P1-v2  Pbv-Mir-199-P1-v3  Pma-Mir-199-o1  Rno-Mir-199-P1-v1  Rno-Mir-199-P1-v2  Rno-Mir-199-P1-v3  Sha-Mir-199-P1-v1  Sha-Mir-199-P1-v2  Sha-Mir-199-P1-v3  Spt-Mir-199-P1  Sto-Mir-199-P1-v1  Sto-Mir-199-P1-v2  Sto-Mir-199-P1-v3  Tgu-Mir-199-P1-v1  Tgu-Mir-199-P1-v2  Tgu-Mir-199-P1-v3  Xtr-Mir-199-P1-v1  Xtr-Mir-199-P1-v2  Xtr-Mir-199-P1-v3 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(danRer11)
chr20: 14875474-14875534 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-199-P1a-v2)
Mir-199-P1a-v1 chr20: 14875474-14875534 [+] UCSC Ensembl
Mir-199-P1a-v2 chr20: 14875474-14875534 [+] UCSC Ensembl
Mir-199-P1a-v3 chr20: 14875474-14875534 [+] UCSC Ensembl
Mir-214-P1-v1 chr20: 14877660-14877721 [+] UCSC Ensembl
Mir-214-P1-v2 chr20: 14877660-14877721 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAGGGCUGGAACUAUCUCCUGCUCCGUCAUCCCAGUGUUCAGACUACCUGUUCAGGAUCAUACUGGUGUACAGUAGUCUGCACAUUGGUUAGACUGUGCAUGGACUCCCGGCGAUGAGGAA
Get precursor sequence
Structure
        10          20        30        40        50        60
GAGGGCUGGAACUAUCU-  -|  UCC   AUC       U        C   U  GGAUC 
                  CC UGC   GUC   CCAGUGU CAGACUAC UGU CA     A
                  GG ACG   CAG   GGUUACA GUCUGAUG ACA GU     U
AAGGAGUAGCGGCCCUCA  U^  UGU   AUU       C        -   U  GGUCA 
 .       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Br Em Ey Gu Gu He Li Li Ov Te
Star sequence

Dre-Mir-199-P1a-v2_5p*

mirBase accessionMIMAT0001277
Sequence
0- CCCAGUGUUCAGACUACCUGUUCA -24
Get sequence
Proposed targets TargetScanFish: dre-miR-199
Mature sequence

Dre-Mir-199-P1a-v2_3p

mirBase accessionMIMAT0003155
Sequence
38- UACAGUAGUCUGCACAUUGGUUA -61
Get sequence